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Comment: Comment: Other databases for deposition of scRNA-seq data than NCBI GEO?
3.4 years ago by mschmid ▴ 180
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1.6k
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Comment: Comment: Other databases for deposition of scRNA-seq data than NCBI GEO?
3.4 years ago by mschmid ▴ 180
0
votes
1
reply
1.6k
views
Comment: Comment: Other databases for deposition of scRNA-seq data than NCBI GEO?
3.4 years ago by mschmid ▴ 180
3
votes
6
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1.6k
views
Other databases for deposition of scRNA-seq data than NCBI GEO?
database scRNA
3.4 years ago by mschmid ▴ 180
0
votes
0
replies
479
views
Open Source replacement for MatInspector (prediction transcription factor binding sites)
transcription-factor
3.4 years ago by mschmid ▴ 180
0
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1
reply
2.1k
views
Blastn: In The Scoring Parameters, What Does "Linear" Mean?
blastn alignment
updated 4.1 years ago by 20 • written 11.1 years ago by ▴ 180
0
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2
replies
2.4k
views
How to retrieve all hmm from TIGRFAM for Cas (CRISPR-associated) proteins?
hmm Cas CRISPR
updated 5.0 years ago by 20 • written 8.1 years ago by ▴ 180
2
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0
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1.7k
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Answer: A: Reference genome for microbiome WGS metagenomics ?
5.2 years ago by mschmid ▴ 180
0
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0
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978
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Comment: C: Which human chromosome would you use to generate a "toy data set"
5.2 years ago by mschmid ▴ 180
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1
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978
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Comment: C: Which human chromosome would you use to generate a "toy data set"
5.2 years ago by mschmid ▴ 180
0
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1
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1.7k
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Comment: C: Reference genome for microbiome WGS metagenomics ?
5.2 years ago by mschmid ▴ 180
4
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4
replies
978
views
Which human chromosome would you use to generate a "toy data set"
sequencing genome
5.2 years ago by mschmid ▴ 180
1
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1
reply
1.7k
views
Comment: C: Reference genome for microbiome WGS metagenomics ?
5.2 years ago by mschmid ▴ 180
0
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1
reply
2.8k
views
Comment: C: Where to put start for assembled genome/plasmid
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 180
0
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1
reply
895
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Mimicing the Blastn "lineage report" from online Blast service
blast
5.5 years ago by mschmid ▴ 180
0
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1
reply
1.2k
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How to get all Blastn hits
blastn
5.5 years ago by mschmid ▴ 180
0
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0
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1.8k
views
Comment: C: Visualize short nucleotide sequences and some ranges on top
5.5 years ago by mschmid ▴ 180
1
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1
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1.8k
views
Comment: C: Visualize short nucleotide sequences and some ranges on top
5.5 years ago by mschmid ▴ 180
4
votes
7
replies
1.8k
views
Visualize short nucleotide sequences and some ranges on top
visualization bed gff
updated 5.5 years ago by ★ 3.4k • written 5.5 years ago by ▴ 180
0
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1
reply
1.8k
views
Comment: C: Visualize short nucleotide sequences and some ranges on top
5.5 years ago by mschmid ▴ 180
6
votes
1
reply
940
views
Detect repeats problematic for PCR
prc repeats
5.5 years ago by mschmid ▴ 180
2
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1
reply
1.7k
views
Get Gene Onthology information for NCBI GeneIDs - Apis mellifera (honey bee)
RNA-Seq GO-Enrichment
updated 5.6 years ago by 89k • written 5.6 years ago by ▴ 180
0
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1
reply
1.0k
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DESeq2 -- Three conditions with "gradient"
DESeq2 RNA-Seq
updated 5.6 years ago by 14k • written 5.6 years ago by ▴ 180
1
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5
replies
1.3k
views
dUTP sequencing -- different strand-ratios for different samples
rna-seq dUTP HISAT2
updated 5.6 years ago by 8.3k • written 5.6 years ago by ▴ 180
0
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1
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1.3k
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Comment: C: dUTP sequencing -- different strand-ratios for different samples
5.6 years ago by mschmid ▴ 180
0
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1
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1.6k
views
Comment: C: Would you remove rRNA reads in silico before testing for diff. expression?
5.6 years ago by mschmid ▴ 180
3
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5
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1.6k
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Would you remove rRNA reads in silico before testing for diff. expression?
RNA-Seq
5.6 years ago by mschmid ▴ 180
0
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0
replies
1.1k
views
Comment: C: Coloring nucleotide sequences according to their GC content
5.6 years ago by mschmid ▴ 180
0
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2
replies
1.1k
views
Coloring nucleotide sequences according to their GC content
sequence
5.6 years ago by mschmid ▴ 180
1
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2
replies
2.3k
views
SMRT analysis- what is difference between RS_HGAP_Assembly.2 vs RS_HGAP_Assembly.3
pacbio assembly
updated 2.7 years ago by 45k • written 9.4 years ago by ▴ 180
1
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0
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2.1k
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Answer: A: ClustalO computing suboptimal alignment
6.0 years ago by mschmid ▴ 180
2
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3
replies
2.1k
views
ClustalO computing suboptimal alignment
alignment clustalomega
6.0 years ago by mschmid ▴ 180
0
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0
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2.1k
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Comment: C: ClustalO computing suboptimal alignment
6.0 years ago by mschmid ▴ 180
0
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0
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1.1k
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Answer: A: Where to find a list of (sequenced) WHO reference strains
6.0 years ago by mschmid ▴ 180
0
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2
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1.1k
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Where to find a list of (sequenced) WHO reference strains
genome
6.0 years ago by mschmid ▴ 180
2
votes
3
replies
1.2k
views
What does 1V1 exactly mean?
alignment polishing
updated 6.1 years ago by 87k • written 6.1 years ago by ▴ 180
3
votes
1
reply
2.1k
views
JGI databases vs GenBank
ncbi jgi img
updated 6.1 years ago by 9.2k • written 6.1 years ago by ▴ 180
0
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0
replies
2.0k
views
Comment: C: Majority of genes upregulated in RNA-seq study of toxic compound
6.4 years ago by mschmid ▴ 180
0
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2
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2.0k
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Comment: C: Majority of genes upregulated in RNA-seq study of toxic compound
6.4 years ago by mschmid ▴ 180
2
votes
11
replies
2.0k
views
Majority of genes upregulated in RNA-seq study of toxic compound
RNA-Seq
updated 6.4 years ago by 8.4k • written 6.4 years ago by ▴ 180
0
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0
replies
2.0k
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Comment: C: Majority of genes upregulated in RNA-seq study of toxic compound
6.4 years ago by mschmid ▴ 180
0
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1
reply
2.0k
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Comment: C: Majority of genes upregulated in RNA-seq study of toxic compound
6.4 years ago by mschmid ▴ 180
0
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1
reply
2.0k
views
Comment: C: Majority of genes upregulated in RNA-seq study of toxic compound
6.4 years ago by mschmid ▴ 180
0
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0
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1.9k
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Comment: C: Get aligment quality / identity from CRAM file (for PacBio and ONT data)
7.1 years ago by mschmid ▴ 180
0
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2
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1.9k
views
Get aligment quality / identity from CRAM file (for PacBio and ONT data)
PacBio ONT cram alignment quality
7.1 years ago by mschmid ▴ 180
0
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1
reply
2.5k
views
Comment: C: bacteriophage genome assembly
7.1 years ago by mschmid ▴ 180
0
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0
replies
1.6k
views
Is it useful to calculate profile hmm from core genome clusters?
genome gene
updated 7.8 years ago by 20 • written 7.9 years ago by ▴ 180
0
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1
reply
1.6k
views
GO enrichment analysis for pseudogenes in bacterium
gene genome
updated 7.8 years ago by ★ 2.8k • written 7.8 years ago by ▴ 180
1
vote
1
reply
1.9k
views
Get all bacterial protein sequences from Genbank but non redundant
ncbi bacteria protein
7.9 years ago by mschmid ▴ 180
1
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0
replies
1.9k
views
Answer: A: Get all bacterial protein sequences from Genbank but non redundant
7.9 years ago by mschmid ▴ 180
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