Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
6
votes
3
replies
5.5k
views
How to make ortholog table with Reciprocal Best Hit blast (Python?) ?
blast
genome
protein
gene
ortholog
updated 4.8 years ago by
Biostar
20 • written 8.1 years ago by
jolespin
▴ 150
0
votes
0
replies
4.5k
views
Comment:
C: tbl2asn Permission denied on Mac
updated 4.9 years ago by
Ram
44k • written 10.6 years ago by
jolespin
▴ 150
0
votes
0
replies
1.9k
views
Comment:
C: Find all genes in pathways associated with a target gene
updated 5.0 years ago by
Ram
44k • written 9.1 years ago by
jolespin
▴ 150
1
vote
2
replies
2.8k
views
Convert SBML to .sif for Cytoscape
cytoscape
network
sbml
updated 2.3 years ago by
Ram
44k • written 9.0 years ago by
jolespin
▴ 150
0
votes
1
reply
1.9k
views
Comment:
C: How to run Maple-2.3.0 (genome.jp) on the command-line?
7.5 years ago by
jolespin
▴ 150
0
votes
3
replies
1.9k
views
How to run Maple-2.3.0 (genome.jp) on the command-line?
kegg
modules
functional
fasta
maple
7.5 years ago by
jolespin
▴ 150
0
votes
1
reply
3.3k
views
How does WGCNA decide which genes are connected?
WGCNA
coexpression
gene
network
analysis
updated 7.6 years ago by
sina.nassiri
▴ 110 • written 8.6 years ago by
jolespin
▴ 150
1
vote
0
replies
1.7k
views
What are some robust correlation measures for network analysis?
network
robust
correlation
gene-expression
8.0 years ago by
jolespin
▴ 150
0
votes
7
replies
11k
views
Help creating .sqn file using tbl2asn to submit multiple sequences to Genbank
submit
batch
tbl2asn
sequence
genbank
updated 3.2 years ago by
Ram
44k • written 10.6 years ago by
jolespin
▴ 150
0
votes
0
replies
1.6k
views
Can someone describe how the SparCC corrected correlation measure works?
RNA-Seq
ChIP-Seq
genome
microbiome
metagenomics
8.0 years ago by
jolespin
▴ 150
2
votes
2
replies
6.0k
views
Download NCBI genome sequences from Python
genomics
genome
python
sequences
ncbi
updated 8.1 years ago by
Jenez
▴ 540 • written 8.1 years ago by
jolespin
▴ 150
0
votes
0
replies
1.5k
views
Find potential biological significance of a k-mer?
kmer
genome
sequence
dna
domain
8.1 years ago by
jolespin
▴ 150
2
votes
1
reply
3.3k
views
How to create a .SIF file?
interactome
gene
genome
RNA-Seq
protein
updated 2.6 years ago by
Ram
44k • written 9.0 years ago by
jolespin
▴ 150
4
votes
2
replies
3.8k
views
Use Python (e.g. mygene, biomart, db2db) to convert GO Terms to all genes in pathway
gene
python
ontology
mygene
pathway
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
jolespin
▴ 150
0
votes
0
replies
1.8k
views
How to interpret the SeqIO.parse record for GenBank features?
biopython
sequence
genome
genbank
parse
8.6 years ago by
jolespin
▴ 150
1
vote
1
reply
3.2k
views
Where to download complete Genbank file?
genbank
genome
gene
updated 20 months ago by
Ram
44k • written 8.6 years ago by
jolespin
▴ 150
0
votes
1
reply
2.1k
views
Gene ontology type analysis for pfam/tigrfams ?
hmm
gene
enrichment
ontology
pfam
8.7 years ago by
jolespin
▴ 150
0
votes
0
replies
1.4k
views
Convert from CyanoBase to Uniprot?
mapping
ontology
biomart
updated 16 months ago by
Ram
44k • written 8.7 years ago by
jolespin
▴ 150
1
vote
3
replies
1.9k
views
Find all genes in pathways associated with a target gene
gene
pathway
genome
kegg
systems-biology
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
jolespin
▴ 150
4
votes
6
replies
6.6k
views
DNA binding site motif database
gene
RNA-Seq
ChIP-Seq
genome
protein
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
jolespin
▴ 150
0
votes
1
reply
6.6k
views
Comment:
C: DNA binding site motif database
9.1 years ago by
jolespin
▴ 150
0
votes
1
reply
6.6k
views
Comment:
C: DNA binding site motif database
9.1 years ago by
jolespin
▴ 150
1
vote
1
reply
3.1k
views
How to normalize K-mer counts for genes of different length
gene
RNA-Seq
kmer
genome
sequence
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
jolespin
▴ 150
1
vote
1
reply
3.3k
views
Using BioPython to get sequences
gene
python
biopython
sequence
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
jolespin
▴ 150
2
votes
2
replies
1.9k
views
Determine which HUGO IDs are coding and non-coding
gene
blast
RNA-Seq
sequencing
genome
updated 2.2 years ago by
Ram
44k • written 9.1 years ago by
jolespin
▴ 150
0
votes
0
replies
4.3k
views
Comment:
C: Database to download HMMs for TIGRFAMS and PFAMS ?
9.2 years ago by
jolespin
▴ 150
0
votes
1
reply
4.3k
views
Comment:
Comment: Database to download HMMs for TIGRFAMS and PFAMS ?
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
jolespin
▴ 150
3
votes
4
replies
4.3k
views
Database to download HMMs for TIGRFAMS and PFAMS ?
hidden markov model
tigrfam
pfam
database
motif
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
jolespin
▴ 150
1
vote
2
replies
3.9k
views
contig with overlaps. how to circularize?
circular
dna
assembly
contig
genome
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
jolespin
▴ 150
2
votes
1
reply
2.0k
views
How to label non-CDS feature using genbank format for viewing in CLC
cds
genbank
clc
dna
updated 2.3 years ago by
Ram
44k • written 9.3 years ago by
jolespin
▴ 150
2
votes
0
replies
2.0k
views
Answer:
A: How to label non-CDS feature using genbank format for viewing in CLC
9.2 years ago by
jolespin
▴ 150
12
votes
8
replies
2.8k
views
6 follow
How else can one quantify a DNA sequence besides GC-content and length?
gc
seq
genome
gene
sequence
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
jolespin
▴ 150
0
votes
1
reply
2.8k
views
Comment:
Comment: How else can one quantify a DNA sequence besides GC-content and length?
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
jolespin
▴ 150
3
votes
2
replies
2.0k
views
Database that has all known proteins associated with a particular PFAM or TIGRFAM?
pfam
tigrfam
protein
database
gene
updated 2.1 years ago by
Ram
44k • written 9.3 years ago by
jolespin
▴ 150
0
votes
0
replies
1.6k
views
Does FragGeneScan find complete ORFs?
ORF
FragGeneScan
next-gen-sequencing
updated 23 months ago by
Ram
44k • written 9.4 years ago by
jolespin
▴ 150
5
votes
1
reply
1.7k
views
Database that says what genetic code a particular organism uses?
genome
gene
sequence
updated 2.0 years ago by
Ram
44k • written 9.4 years ago by
jolespin
▴ 150
0
votes
0
replies
2.3k
views
Full version of E. coli SBML model file ?
metabolism
sbml
updated 23 months ago by
Ram
44k • written 9.5 years ago by
jolespin
▴ 150
2
votes
3
replies
3.8k
views
Command line blast database problem
sequence
blast
alignment
software-error
updated 23 months ago by
Ram
44k • written 9.5 years ago by
jolespin
▴ 150
0
votes
1
reply
3.8k
views
Comment:
Comment: Command line blast database problem
updated 23 months ago by
Ram
44k • written 9.5 years ago by
jolespin
▴ 150
0
votes
0
replies
2.3k
views
Comment:
Comment: ATP = ADP + ATP_base? What is ATP_base?
updated 21 months ago by
Ram
44k • written 9.5 years ago by
jolespin
▴ 150
4
votes
2
replies
2.3k
views
ATP = ADP + ATP_base? What is ATP_base?
atp_base
metabolism
atp
updated 21 months ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
0
votes
0
replies
1.6k
views
Defining initial concentrations and rate equations in PySCeS ?
metabolic
kinetics
pysces
modeling
python
updated 3.1 years ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
1
vote
0
replies
1.9k
views
Answer:
A: Losing all data after filter step using SGA
9.6 years ago by
jolespin
▴ 150
1
vote
1
reply
1.9k
views
Losing all data after filter step using SGA
kmer
SGA
filter
assemly
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
0
votes
0
replies
2.5k
views
Comment:
Comment: Tool to convert METATOOLS model file to SBML or .psc format
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
1
vote
2
replies
2.5k
views
Tool to convert METATOOLS model file to SBML or .psc format
psc
sbml
metabolism
metatools
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
1
vote
1
reply
2.7k
views
List all KEGG reaction IDs for organism with Orange.bio.kegg module Python
orange
python
kegg
reactions
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
1
vote
0
replies
2.7k
views
Answer:
Answer: List all KEGG reaction IDs for organism with Orange.bio.kegg module Python
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
1
vote
0
replies
2.4k
views
Answer:
Answer: Python package similar to METATOOL 5.0 ?
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
jolespin
▴ 150
2
votes
1
reply
2.4k
views
Python package similar to METATOOL 5.0 ?
metabolic
python
metabolism
modeling
updated 2.4 years ago by
Ram
44k • written 9.7 years ago by
jolespin
▴ 150
64 results • Page
1 of 2
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6