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1
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7
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4.5k
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error in pipeline installation dependent on numpy version 1.18.5
numpy cnn python imaging
updated 5 months ago by 15k • written 2.5 years ago by ▴ 260
0
votes
1
reply
1.4k
views
Xenium multi sample data
Xenium batch-effect annotation
updated 11 months ago by 45k • written 13 months ago by ▴ 260
3
votes
3
replies
905
views
How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
gatk vcf liftover
updated 13 months ago by 45k • written 13 months ago by ▴ 260
0
votes
0
replies
667
views
cnetplot enrichment graph to cytoscape
clusterprofiler cnetplot enrichplot
2.0 years ago by Omics data mining ▴ 260
0
votes
1
reply
1.3k
views
Comment: Comment: Spatial transcriptome analysis
2.1 years ago by Omics data mining ▴ 260
0
votes
0
replies
2.7k
views
from seurat to scanpy data conversion and re-scaling
transctiptome eurat scanpy conversion spatial
2.1 years ago by Omics data mining ▴ 260
1
vote
1
reply
1.4k
views
Right assay and slot for the extraction of normalized data after "sct normalization" and "anchor based integration"
single normalization integration cell sct anchor seurat based
updated 2.2 years ago by ★ 1.9k • written 2.2 years ago by ▴ 260
0
votes
1
reply
709
views
pipeline for correlation of RNASeq and Methylation data
rnaseq methylation correlation normalization data
updated 2.2 years ago by ★ 3.1k • written 2.2 years ago by ▴ 260
0
votes
1
reply
1.0k
views
Customizable pvalue scales in clusterprofiler
clusterprofiler
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 260
0
votes
0
replies
1.9k
views
Comment: Comment: clusterprofiler dotplot facet_grid plot based on ONTOLOGY
2.2 years ago by Omics data mining ▴ 260
2
votes
2
replies
1.9k
views
clusterprofiler dotplot facet_grid plot based on ONTOLOGY
dotplot clusterprofiler facet_grid
2.2 years ago by Omics data mining ▴ 260
0
votes
0
replies
560
views
normalization and integration of two independent single cell cohorts
single-cell batch-effect normalization
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 260
0
votes
1
reply
1.8k
views
normalized score for SpatialFeaturePlot
Spatial Transcriptome normalization integration Seurat
updated 2.2 years ago by ★ 1.9k • written 2.2 years ago by ▴ 260
2
votes
1
reply
5.7k
views
Comment: Comment: How to include spatial coordinate data into anndata within scanpy
2.2 years ago by Omics data mining ▴ 260
0
votes
0
replies
1.2k
views
Comment: Comment: Visualization of Enrichment score for spatial 10x visium samples
2.4 years ago by Omics data mining ▴ 260
1
vote
2
replies
1.2k
views
Visualization of Enrichment score for spatial 10x visium samples
visium transctiptome 10x enrichment scores spatial
2.4 years ago by Omics data mining ▴ 260
1
vote
2
replies
996
views
deconvolution of spatial transcriptome
deconvolution spatial transcriptome
updated 2.4 years ago by ★ 4.7k • written 2.4 years ago by ▴ 260
0
votes
1
reply
2.7k
views
change color and scale in SpatialFeaturePlot
clustering Seurat spatial-transcriptome
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 260
0
votes
0
replies
1.7k
views
error plotting spatial data in scanpy
scanpy spatial-transcriptome
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 260
2
votes
0
replies
932
views
Input at BINDetect step (for TOBIAS pipeline) with multiple files
differential ATAC-Seq tobias motifs
2.4 years ago by Omics data mining ▴ 260
0
votes
0
replies
4.5k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
2.4 years ago by Omics data mining ▴ 260
0
votes
1
reply
4.5k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
2.4 years ago by Omics data mining ▴ 260
0
votes
1
reply
4.5k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
2.5 years ago by Omics data mining ▴ 260
3
votes
8
replies
7.7k
views
bait interval list for picard collecthsmetrices
picard alignment exome
updated 2.5 years ago by ▴ 20 • written 7.0 years ago by ▴ 260
1
vote
1
reply
739
views
DESeq2 with multiple conditional data
multi differential DESeq2 genes factor
updated 2.5 years ago by 13k • written 2.5 years ago by ▴ 260
8
votes
6
replies
5.7k
views
How to include spatial coordinate data into anndata within scanpy
scanpy visium transcriptome spatial 10X
updated 17 months ago by • 0 • written 2.7 years ago by ▴ 260
1
vote
1
reply
813
views
Batch effect of sequencing data that were sequenced in different locations
DESeq2 batch-effect
updated 11 months ago by 45k • written 2.7 years ago by ▴ 260
0
votes
0
replies
796
views
Error plotting the markers in sc.pl.rank_genes_groups_dotplot
scanpy trasncriptome seurat spatial
2.7 years ago by Omics data mining ▴ 260
0
votes
1
reply
739
views
identification of overlapped, proximal and distal gene for peak regions
chip idenfication peak seq gene
updated 2.7 years ago by ▴ 410 • written 2.7 years ago by ▴ 260
0
votes
0
replies
1.7k
views
Comment: Comment: nested elements in bed file using awk
2.7 years ago by Omics data mining ▴ 260
0
votes
0
replies
892
views
Comment: Comment: cluster identification and DEGs in single cell data
2.7 years ago by Omics data mining ▴ 260
1
vote
2
replies
892
views
cluster identification and DEGs in single cell data
deg cluster seurat analysis
2.7 years ago by Omics data mining ▴ 260
0
votes
2
replies
1.7k
views
Comment: Comment: nested elements in bed file using awk
2.7 years ago by Omics data mining ▴ 260
3
votes
6
replies
1.7k
views
nested elements in bed file using awk
coordinates bedops genome awk
2.7 years ago by Omics data mining ▴ 260
0
votes
1
reply
1.4k
views
Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
2.7 years ago by Omics data mining ▴ 260
4
votes
1
reply
1.9k
views
SCTransform in single cell
SCTransform seurat
updated 2.8 years ago by 152k • written 2.8 years ago by ▴ 260
0
votes
0
replies
1.1k
views
Comment: Comment: overlap statistics among multiple bed files
2.8 years ago by Omics data mining ▴ 260
0
votes
0
replies
800
views
Comment: Comment: exportFASTA not working
2.8 years ago by Omics data mining ▴ 260
0
votes
1
reply
1.1k
views
Comment: Comment: overlap statistics among multiple bed files
2.8 years ago by Omics data mining ▴ 260
1
vote
4
replies
1.1k
views
overlap statistics among multiple bed files
bedtools
updated 2.0 years ago by 45k • written 2.8 years ago by ▴ 260
0
votes
2
replies
800
views
exportFASTA not working
exportFASTA biomart getSeq
2.8 years ago by Omics data mining ▴ 260
0
votes
2
replies
812
views
Filteration of uniquely mapped reads
samtools bam
updated 2.0 years ago by 45k • written 2.8 years ago by ▴ 260
1
vote
0
replies
932
views
Comment: Comment: Identifying DEG's on Integrated samples
2.8 years ago by Omics data mining ▴ 260
1
vote
2
replies
1.4k
views
Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
2.8 years ago by Omics data mining ▴ 260
0
votes
0
replies
2.8k
views
Comment: Comment: conda env in snakemake
2.8 years ago by Omics data mining ▴ 260
0
votes
1
reply
2.8k
views
Comment: Comment: conda env in snakemake
2.8 years ago by Omics data mining ▴ 260
0
votes
4
replies
2.8k
views
conda env in snakemake
snakemake conda
2.8 years ago by Omics data mining ▴ 260
0
votes
1
reply
3.7k
views
SCTransform + Harmony in Seurat for batch correction
batch transcriptome spatial correction Seurat
updated 3.1 years ago by ▴ 10 • written 3.3 years ago by ▴ 260
0
votes
0
replies
845
views
Comment: Comment: from dexseq results to alternative splicing events identification
3.3 years ago by Omics data mining ▴ 260
0
votes
0
replies
614
views
calculate the variance across the samples
10X spatial cell single visium
3.3 years ago by Omics data mining ▴ 260
163 results • Page 1 of 4
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