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UMI tools to extract Paired end miRNA reads
paired umi_extract
updated 23 days ago by ★ 1.3k • written 25 days ago by ▴ 30
0
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0
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129
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Discripancy in miRDeep2.pl and quantifier.pl outputs
miRDeep2
4 weeks ago by otieno43 ▴ 30
0
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1
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368
views
Comment: Comment: Error in as.unit(e2) : object is not coercible to a unit
5 weeks ago by otieno43 ▴ 30
0
votes
3
replies
368
views
Error in as.unit(e2) : object is not coercible to a unit
R Venn-diagram venn
updated 5 weeks ago by 44k • written 5 weeks ago by ▴ 30
0
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0
replies
759
views
Comment: Comment: Alignment of multiple files using STARSolo
3 months ago by otieno43 ▴ 30
0
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1
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759
views
Comment: Comment: Alignment of multiple files using STARSolo
3 months ago by otieno43 ▴ 30
1
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8
replies
759
views
Alignment of multiple files using STARSolo
STARSolo
3 months ago by otieno43 ▴ 30
0
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1
reply
759
views
Comment: Comment: Alignment of multiple files using STARSolo
3 months ago by otieno43 ▴ 30
0
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0
replies
759
views
Comment: Comment: Alignment of multiple files using STARSolo
updated 3 months ago by 147k • written 3 months ago by ▴ 30
0
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2
replies
962
views
How to use topGO tool for enrichment analysis of non-model organisms
topGO
updated 5 months ago by • 0 • written 9 months ago by ▴ 30
1
vote
1
reply
533
views
Problem with Mirdeep2 and Randfold output
mirdeep2 Randfold
7 months ago by otieno43 ▴ 30
1
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0
replies
533
views
Answer: Answer: Problem with Mirdeep2 and Randfold output
7 months ago by otieno43 ▴ 30
0
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0
replies
795
views
Comment: Comment: UMI_extract for paired end reads of micro_RNA
8 months ago by otieno43 ▴ 30
1
vote
5
replies
795
views
UMI_extract for paired end reads of micro_RNA
UMI-tools UMI miRNA
updated 8 months ago by 85k • written 8 months ago by ▴ 30
0
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1
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795
views
Comment: Comment: UMI_extract for paired end reads of micro_RNA
8 months ago by otieno43 ▴ 30
0
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0
replies
350
views
Problem with mirdeep2: The mapped reference id from refdb.arf is not an id of the genome fasta file
mirdeep2
updated 11 months ago by 44k • written 11 months ago by ▴ 30
0
votes
3
replies
746
views
Extracting list of identical items from several excel files
from excel items Extract file
updated 12 months ago by • 0 • written 12 months ago by ▴ 30
0
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0
replies
363
views
How to deal with mirdeep2 output "miRBase miRNAs not detected by miRDeep2"
miRNAs miRBase
12 months ago by otieno43 ▴ 30
0
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0
replies
877
views
Comment: Comment: How to use awk and grep -v option to exclude several patterns from several lines
12 months ago by otieno43 ▴ 30
2
votes
2
replies
877
views
How to use awk and grep -v option to exclude several patterns from several lines
AWK GREP
updated 12 months ago by 12k • written 12 months ago by ▴ 30
0
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1
reply
1.5k
views
Comment: Comment: Alignment of mirna on specific organism data from mirbase
13 months ago by otieno43 ▴ 30
0
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9
replies
1.5k
views
Alignment of mirna on specific organism data from mirbase
mirbase miRNA
updated 13 months ago by 164k • written 13 months ago by ▴ 30
0
votes
1
reply
639
views
How to obtain unmapped reads from the paired end samples using hisat2
fastq hisat2
updated 20 months ago by 44k • written 22 months ago by ▴ 30
0
votes
1
reply
813
views
Minimum number of UMI counts/cell
scRNAseq
updated 23 months ago by 85k • written 23 months ago by ▴ 30
0
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0
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2.0k
views
Comment: Comment: How to obtain a data frame from "SeuratObject".
23 months ago by otieno43 ▴ 30
0
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2
replies
2.0k
views
How to obtain a data frame from "SeuratObject".
Count matrix
23 months ago by otieno43 ▴ 30
0
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0
replies
1.3k
views
Comment: Comment: STAR alignment and HTseq-count
23 months ago by otieno43 ▴ 30
0
votes
2
replies
1.3k
views
STAR alignment and HTseq-count
and alignment HTseq-count STAR
23 months ago by otieno43 ▴ 30
0
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1
reply
2.2k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
2.3 years ago by otieno43 ▴ 30
0
votes
1
reply
2.2k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 30
1
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4
replies
2.2k
views
How to use RSEM to quantify genes and transcript expression from STAR outpute file (Aligned.toTranscriptome.out.bam)
RSEM STAR
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 30
1
vote
3
replies
1.1k
views
How to improve alignment of scRNA-seq data in using CellRanger
scRNAseq
updated 2.4 years ago by ★ 6.9k • written 2.4 years ago by ▴ 30
0
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0
replies
1.1k
views
Comment: Comment: How to improve alignment of scRNA-seq data in using CellRanger
2.4 years ago by otieno43 ▴ 30
0
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0
replies
682
views
Comment: Comment: How solve solve error associated with cell clustering: quickCluster
2.4 years ago by otieno43 ▴ 30
0
votes
2
replies
682
views
How solve solve error associated with cell clustering: quickCluster
scRNAseq
2.4 years ago by otieno43 ▴ 30
0
votes
1
reply
1.1k
views
calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMetrics
scRNAseq
updated 2.4 years ago by ★ 1.6k • written 2.4 years ago by ▴ 30
0
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0
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1.0k
views
Comment: Comment: Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than c
2.4 years ago by otieno43 ▴ 30
2
votes
2
replies
1.0k
views
Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
2.4 years ago by otieno43 ▴ 30
0
votes
0
replies
2.8k
views
Comment: Comment: Extract transcript fasta sequences using gtf
2.6 years ago by otieno43 ▴ 30
0
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1
reply
2.8k
views
Comment: Comment: Extract transcript fasta sequences using gtf
2.6 years ago by otieno43 ▴ 30
2
votes
5
replies
2.8k
views
Extract transcript fasta sequences using gtf
transcript using fasta gtf sequences
updated 2.6 years ago by 13k • written 2.6 years ago by ▴ 30
3
votes
2
replies
4.0k
views
Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
Trimmomatic adapters Trimming using
2.8 years ago by otieno43 ▴ 30
0
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0
replies
4.0k
views
Comment: Comment: Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
2.8 years ago by otieno43 ▴ 30
0
votes
1
reply
1.9k
views
Comment: Comment: Error in executing STAR Aligner
2.8 years ago by otieno43 ▴ 30
0
votes
1
reply
1.9k
views
Comment: Comment: Error in executing STAR Aligner
2.8 years ago by otieno43 ▴ 30
0
votes
5
replies
1.9k
views
Error in executing STAR Aligner
Exit code 102
updated 2.8 years ago by 22k • written 2.8 years ago by ▴ 30
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