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Bandage visualization of the transcriptome
Trinity transcriptomics Bandage RNA-seq
updated 8 months ago by 45k • written 8 months ago by ▴ 40
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1.0k
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Comment: Comment: TaxID mapping file
13 months ago by Lada ▴ 40
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1.0k
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Comment: Comment: TaxID mapping file
13 months ago by Lada ▴ 40
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4
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1.0k
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TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
updated 8 weeks ago by • 0 • written 13 months ago by ▴ 40
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1.2k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
13 months ago by Lada ▴ 40
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1
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1.2k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
13 months ago by Lada ▴ 40
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1.2k
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Comment: Comment: How to trim transcripts using information from NCBI contamination screen report
13 months ago by Lada ▴ 40
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5
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1.2k
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How to trim transcripts using information from NCBI contamination screen report
RNAseq assembly transcriptome contamination
13 months ago by Lada ▴ 40
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0
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26k
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Comment: Comment: BLAST options: max_target_seqs and num_alignments
15 months ago by Lada ▴ 40
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0
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631
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Pearson correlation for RNAseq data - input formats
vst Pearson-correlation TPM rlog RNA-seq
updated 19 months ago by 45k • written 19 months ago by ▴ 40
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471
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Salmon - mapping outputs
transcriptome RNAseq Salmon
20 months ago by Lada ▴ 40
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2.3k
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Comment: Comment: Providing multiple read files to Salmon
20 months ago by Lada ▴ 40
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1
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2.3k
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Comment: Comment: Providing multiple read files to Salmon
20 months ago by Lada ▴ 40
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1
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3.7k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
21 months ago by Lada ▴ 40
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2
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3.7k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
21 months ago by Lada ▴ 40
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0
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556
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OrthoPhy
orthophy orthofinder
updated 21 months ago by 45k • written 21 months ago by ▴ 40
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2
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3.7k
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Comment: Comment: How to remove fasta headers in a multifasta file and write file name as a fasta
updated 21 months ago by 152k • written 21 months ago by ▴ 40
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1.1k
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Comment: Comment: ML tree inferred from multiple genes
21 months ago by Lada ▴ 40
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2
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1.1k
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ML tree inferred from multiple genes
phylogeny iqtree ML phylotranscriptomics orthologues
21 months ago by Lada ▴ 40
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1.2k
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Answer: Answer: How to download Time Calibration Data for Phylogenetic tree estimation ?
21 months ago by Lada ▴ 40
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0
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1.2k
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Answer: Answer: Fossil calibration in PAML software?
21 months ago by Lada ▴ 40
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0
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1.6k
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Comment: Comment: Multiple sequence aligments - parallelisation
21 months ago by Lada ▴ 40
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1
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1.6k
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Comment: Comment: Multiple sequence aligments - parallelisation
21 months ago by Lada ▴ 40
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1
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1.6k
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Comment: Comment: Multiple sequence aligments - parallelisation
21 months ago by Lada ▴ 40
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5
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1.6k
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Multiple sequence aligments - parallelisation
MSA phylotranscriptomics muscle clustal
21 months ago by Lada ▴ 40
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1.7k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
22 months ago by Lada ▴ 40
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1.7k
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Comment: Comment: Expected number of raw reads in fq.gz files in PE sequencing
22 months ago by Lada ▴ 40
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5
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1.7k
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Expected number of raw reads in fq.gz files in PE sequencing
RNA-seq fastq transcriptomics
updated 22 months ago by 45k • written 22 months ago by ▴ 40
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1.3k
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Comment: Comment: EggNOG mapper annotation results
22 months ago by Lada ▴ 40
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1
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1.6k
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Comment: Comment: Comparative transcriptomics
2.1 years ago by Lada ▴ 40
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0
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746
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Comment: Comment: Corset -D parameter
2.2 years ago by Lada ▴ 40
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2
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746
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Corset -D parameter
RNAseq transcriptomic Corset
2.2 years ago by Lada ▴ 40
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1.5k
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Comment: Comment: Salmon lib_format_counts.json - explanation
2.3 years ago by Lada ▴ 40
2
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2
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1.5k
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Salmon lib_format_counts.json - explanation
RNAseq strand-specificity transcriptomic Salmon
2.3 years ago by Lada ▴ 40
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0
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755
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Comment: Comment: What is correct percentage of sense-stranded transcripts in directional de novo
2.3 years ago by Lada ▴ 40
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1
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755
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What is correct percentage of sense-stranded transcripts in directional de novo assemblies ?
Trinity strand-specificity RNA-seq Transdecoder
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 40
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1
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32k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
updated 4 months ago by 45k • written 2.4 years ago by ▴ 40
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0
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4.0k
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Comment: Comment: GSEA on nonmodel organisms
2.4 years ago by Lada ▴ 40
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4.0k
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Comment: Comment: GSEA on nonmodel organisms
2.4 years ago by Lada ▴ 40
3
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4
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4.0k
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GSEA on nonmodel organisms
GSEA RNAseq transcriptomics multispecies R
2.4 years ago by Lada ▴ 40
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0
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1.7k
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Comment: Comment: Differentially gene expression multispecies
2.4 years ago by Lada ▴ 40
1
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0
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818
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Comment: Comment: How to normalise counts to compare RNAseq results between two spcecies
2.4 years ago by Lada ▴ 40
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1
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1.6k
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Comment: Comment: Comparative transcriptomics
2.4 years ago by Lada ▴ 40
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0
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1.5k
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Comment: Comment: comparative transcriptome - how to normalize and analyze DEGs?
2.4 years ago by Lada ▴ 40
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1
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2.3k
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Comment: Comment: Differential expression analysis
2.4 years ago by Lada ▴ 40
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0
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1.4k
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Comment: Comment: When comparing gene expression in different species, should I assemble separate
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 40
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0
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1.1k
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Answer: Answer: Differential Expression Analyses between closely related species
2.4 years ago by Lada ▴ 40
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0
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1.1k
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
3.3 years ago by Lada ▴ 40
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1
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1.1k
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Comment: Comment: Transcriptome assembly -mixing stranded and non-stranded data
3.3 years ago by Lada ▴ 40
3
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4
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1.1k
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Transcriptome assembly -mixing stranded and non-stranded data
Transcriptome assembly
3.3 years ago by Lada ▴ 40
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