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2
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752
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Answer: Answer: Calculate TMB from BAM file
23 months ago by Trivas ★ 1.9k
1
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2
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1.8k
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Comment: Comment: Double biological replication when using DESeq2
23 months ago by Trivas ★ 1.9k
0
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0
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1.1k
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Comment: Comment: Convert with respect to first column (repeated values) into rows (transposon)
23 months ago by Trivas ★ 1.9k
0
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0
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2.1k
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Comment: Comment: bedtools coverage, Use “stdin”
23 months ago by Trivas ★ 1.9k
0
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1
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1.1k
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Comment: Comment: Convert with respect to first column (repeated values) into rows (transposon)
23 months ago by Trivas ★ 1.9k
0
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0
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650
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Answer: Answer: How to add new coordinates to the existing .gtf annotation file
23 months ago by Trivas ★ 1.9k
0
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0
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1.2k
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Answer: Answer: Lollipop plots for structural variation coordinates
23 months ago by Trivas ★ 1.9k
1
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1
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2.3k
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Comment: Comment: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
23 months ago by Trivas ★ 1.9k
0
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0
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1.2k
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Comment: Comment: IsoformSwitchAnalyzeR Error in reading GTF file
23 months ago by Trivas ★ 1.9k
0
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1
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1.2k
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Comment: Comment: IsoformSwitchAnalyzeR Error in reading GTF file
23 months ago by Trivas ★ 1.9k
0
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0
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931
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Answer: Answer: Is it possible to do standard GSEA in R?
24 months ago by Trivas ★ 1.9k
1
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1
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2.2k
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Comment: Comment: differential splicing between two groups for 5 genes
24 months ago by Trivas ★ 1.9k
0
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2
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2.2k
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Answer: Answer: differential splicing between two groups for 5 genes
24 months ago by Trivas ★ 1.9k
0
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1
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1.7k
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Comment: Comment: IsoformSwitchAnalyserR lmportR data warning.
24 months ago by Trivas ★ 1.9k
3
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0
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984
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Answer: Answer: Veen diagram in RNA-Seq
2.0 years ago by Trivas ★ 1.9k
1
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1
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744
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Best practice for normalizing sequencing depth for differential miRNA expression?
DESeq2 miRge3 normalization miRNA
updated 2.0 years ago by ★ 1.3k • written 2.0 years ago by ★ 1.9k
0
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2
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2.3k
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Answer: Answer: Providing multiple read files to Salmon
2.0 years ago by Trivas ★ 1.9k
3
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0
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1.5k
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Answer: Answer: extreme high log2FoldChange in DESeq2 result
2.0 years ago by Trivas ★ 1.9k
0
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1
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2.1k
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Answer: Answer: A question about the raw RNA-seq processing workflow
2.0 years ago by Trivas ★ 1.9k
2
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1
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871
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Answer: Answer: I don't really understand what fold mean means
2.0 years ago by Trivas ★ 1.9k
1
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1
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2.0k
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Answer: Answer: How to get information about promoter from bulk-RNAseq?
2.0 years ago by Trivas ★ 1.9k
0
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1
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3.2k
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Comment: Comment: Correct way to remove Nextera adapters from ITS sequences
2.0 years ago by Trivas ★ 1.9k
1
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1
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1.6k
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Comment: Comment: Same GEO Accession, different SRR number, how to download this RNA-seq paired-en
2.0 years ago by Trivas ★ 1.9k
1
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0
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2.2k
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Comment: Comment: Italicise annotations with pheatmap
2.0 years ago by Trivas ★ 1.9k
1
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1
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1.2k
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Answer: Answer: How to make the profile line of `deepTools::plotHeatmap` more smooth?
2.0 years ago by Trivas ★ 1.9k
1
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1
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4.7k
views
Comment: Comment: ggsave() bug in ggplot2?
2.0 years ago by Trivas ★ 1.9k
0
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1
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2.7k
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Answer: Answer: Dot Plot using KEGG
2.0 years ago by Trivas ★ 1.9k
0
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1
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1.8k
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Answer: Answer: How to make a dotplot for bulk RNA average expression ?
2.0 years ago by Trivas ★ 1.9k
1
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0
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840
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Answer: Answer: Covert multiple short sequence into list of IUPAC motif
2.0 years ago by Trivas ★ 1.9k
0
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1
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2.2k
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Comment: Comment: how to create correlation matrix R
2.0 years ago by Trivas ★ 1.9k
0
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0
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1.5k
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Comment: Comment: How do I add row names to pheatmap() when I am using a pre-normalized matrix?
2.1 years ago by Trivas ★ 1.9k
1
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0
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3.3k
views
Comment: Comment: bitr() doesn't recognize the keys I've entered as valid gene symbols for my orga
2.1 years ago by Trivas ★ 1.9k
0
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1
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1.4k
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Answer: Answer: Using t test to compare z-scores from RNA expression data
2.1 years ago by Trivas ★ 1.9k
0
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2
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2.6k
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Comment: Comment: Need help in mapping color to levels in ComplexHeatmap
2.1 years ago by Trivas ★ 1.9k
0
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1
reply
4.7k
views
Comment: Comment: Convert Nanopore Fast5 files to Fasta format
2.1 years ago by Trivas ★ 1.9k
2
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1
reply
2.5k
views
Comment: Comment: how to make a venn plot with data frame in R
2.1 years ago by Trivas ★ 1.9k
3
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1
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2.9k
views
Comment: Comment: Annotating TSS: By Transcript or by Gene? Code Validation Help Needed!
2.1 years ago by Trivas ★ 1.9k
1
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0
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2.1k
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Answer: Answer: How to convert chromosome locations to gene symbols?
2.1 years ago by Trivas ★ 1.9k
5
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1
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1.1k
views
Answer: Answer: Why is RNA-Seq library size not constant among samples?
2.1 years ago by Trivas ★ 1.9k
1
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0
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1.3k
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Comment: Comment: Normalizing RNA read counts for each gene?
2.1 years ago by Trivas ★ 1.9k
2
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0
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1.2k
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Answer: Answer: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
2.1 years ago by Trivas ★ 1.9k
0
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0
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3.2k
views
Answer: Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
2.1 years ago by Trivas ★ 1.9k
7
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0
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2.0k
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Answer: Answer: R ggrepel for overlapping text in the whole plot
2.1 years ago by Trivas ★ 1.9k
0
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0
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1.2k
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Comment: Comment: miRDeep2 mapper.pl not generating *collapsed.fa and/or *.arf files correctly?
2.1 years ago by Trivas ★ 1.9k
1
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1
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1.2k
views
Comment: Comment: miRDeep2 mapper.pl not generating *collapsed.fa and/or *.arf files correctly?
2.1 years ago by Trivas ★ 1.9k
2
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0
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1.8k
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Comment: Comment: Error in colorRamp2(c(quantile(mean)[1], quantile(mean)[4], c("white", : arg
2.1 years ago by Trivas ★ 1.9k
4
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1
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1.8k
views
Answer: Answer: Error in colorRamp2(c(quantile(mean)[1], quantile(mean)[4], c("white", : arg
2.1 years ago by Trivas ★ 1.9k
1
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0
replies
1.4k
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Comment: Comment: RNA SEQ reads assembly for illumina sequenced data
2.1 years ago by Trivas ★ 1.9k
0
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1
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1.4k
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Comment: Comment: RNA SEQ reads assembly for nanopore sequenced data
2.1 years ago by Trivas ★ 1.9k
0
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1
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1.0k
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Comment: Comment: BAM files from RNAseq showing counts in genomic regions with no genes present
2.1 years ago by Trivas ★ 1.9k
311 results • Page 3 of 7
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