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499
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Comment: Comment: Remove especific reads from a metagenomic sequencing run
8 months ago by SushiRoll ▴ 140
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0
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747
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Answer: Answer: Relative abundance of plasmid DNA content in each sample
8 months ago by SushiRoll ▴ 140
1
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2
replies
499
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Remove specific reads from a metagenomic sequencing run
metagenomics
updated 8 months ago by 7.4k • written 8 months ago by ▴ 140
0
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0
replies
388
views
Comparison between Bracken outputs
Bracken Kraken Taxonomy
12 months ago by SushiRoll ▴ 140
0
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1
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1.1k
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Comment: Comment: Problems running Roary
updated 15 months ago by 45k • written 16 months ago by ▴ 140
0
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3
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1.1k
views
Problems running Roary
pangenome Roary
updated 15 months ago by 45k • written 16 months ago by ▴ 140
0
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0
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779
views
Comment: Comment: Proper HTSeq usage on bacterial genome. Don't quite understand --t
18 months ago by SushiRoll ▴ 140
2
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2
replies
779
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Proper HTSeq usage on bacterial genome. Don't quite understand --t
RNAseq HTSeq
18 months ago by SushiRoll ▴ 140
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0
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2.0k
views
Comment: Comment: Kraken2 is falsely assigning Klebsiella
19 months ago by SushiRoll ▴ 140
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1
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2.0k
views
Comment: Comment: Kraken2 is falsely assigning Klebsiella
19 months ago by SushiRoll ▴ 140
6
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4
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2.0k
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Kraken2 is falsely assigning Klebsiella
taxonomy Kraken2
19 months ago by SushiRoll ▴ 140
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2
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2.3k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
19 months ago by SushiRoll ▴ 140
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0
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1.3k
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Comment: Comment: Kraken2 recovering only classified reads
19 months ago by SushiRoll ▴ 140
2
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2
replies
1.3k
views
Kraken2 recovering only classified reads
Kraken2 taxonomy classification
19 months ago by SushiRoll ▴ 140
1
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0
replies
1.3k
views
Comment: Comment: How to determine number of SNPs called?
20 months ago by SushiRoll ▴ 140
0
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1
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1.3k
views
Comment: Comment: How to determine number of SNPs called?
20 months ago by SushiRoll ▴ 140
1
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3
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1.3k
views
How to determine number of SNPs called?
Snippy SNP
20 months ago by SushiRoll ▴ 140
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3
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4.1k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 2.4 years ago by ▴ 140
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0
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1.1k
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Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
23 months ago by SushiRoll ▴ 140
0
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1
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1.1k
views
Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
23 months ago by SushiRoll ▴ 140
1
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4
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1.1k
views
Bacterial metatransciptome antimicrobial resistance genes workflow?
RNAseq metatranscriptomics
23 months ago by SushiRoll ▴ 140
0
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0
replies
886
views
Comment: Comment: Is there a SILVA database version with only prokaryotes?
2.0 years ago by SushiRoll ▴ 140
0
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2
replies
886
views
Is there a SILVA database version with only prokaryotes?
taxonomy SILVA 16S
2.0 years ago by SushiRoll ▴ 140
0
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0
replies
505
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Inferring relative gene abundance from short reads
metagenomics read 16S short mapping
2.0 years ago by SushiRoll ▴ 140
0
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0
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1.4k
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
2.1 years ago by SushiRoll ▴ 140
0
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1
reply
1.4k
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
2.1 years ago by SushiRoll ▴ 140
2
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5
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1.4k
views
How many refseqs are in refseq.genomes.k21.s1000.msh?
mash refseq
2.1 years ago by SushiRoll ▴ 140
0
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1
reply
2.0k
views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
2.2 years ago by SushiRoll ▴ 140
1
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1
reply
1.3k
views
Answer: Answer: Genome data visualization
2.2 years ago by SushiRoll ▴ 140
0
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0
replies
1.2k
views
Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
2.2 years ago by SushiRoll ▴ 140
0
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1
reply
1.2k
views
Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
2.3 years ago by SushiRoll ▴ 140
2
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4
replies
1.2k
views
Retrieve specific fasta sequences from a group of assemblies
CDS gene sequence
2.2 years ago by SushiRoll ▴ 140
1
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0
replies
607
views
Enzyme substrate prediction - where to start?
enzyme substrate Protein docking
2.3 years ago by SushiRoll ▴ 140
0
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0
replies
550
views
NMDS from SNP distance matrix
NMDS SNP
2.3 years ago by SushiRoll ▴ 140
0
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0
replies
1.5k
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Comment: Comment: Need to compare two proteins
2.4 years ago by SushiRoll ▴ 140
6
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1
reply
1.5k
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Answer: Answer: Need to compare two proteins
2.4 years ago by SushiRoll ▴ 140
0
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0
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2.4k
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Comment: Comment: How can I trim this data using Trimmomatic?
2.4 years ago by SushiRoll ▴ 140
0
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1
reply
2.4k
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Answer: Answer: How can I trim this data using Trimmomatic?
2.4 years ago by SushiRoll ▴ 140
0
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0
replies
1.1k
views
Comment: Comment: How many SNPs are too many?
2.4 years ago by SushiRoll ▴ 140
0
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1
reply
1.1k
views
Comment: Comment: How many SNPs are too many?
2.4 years ago by SushiRoll ▴ 140
0
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4
replies
1.1k
views
How many SNPs are too many?
snp
2.4 years ago by SushiRoll ▴ 140
0
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0
replies
4.1k
views
Comment: Comment: Discussion question: Cutoff for SNP phylogeny
2.4 years ago by SushiRoll ▴ 140
0
votes
0
replies
594
views
Using -fconst to run IQTree
IQtree phylogeny
2.4 years ago by SushiRoll ▴ 140
1
vote
0
replies
872
views
Snippy core output
SNP Snippy-core Snippy
2.4 years ago by SushiRoll ▴ 140
0
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0
replies
506
views
qPCR and HT-PCR inconsistency
HT-PCR qPCR
2.4 years ago by SushiRoll ▴ 140
0
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0
replies
1.3k
views
Comment: Comment: Doubt with snippy-multi reference
2.5 years ago by SushiRoll ▴ 140
2
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2
replies
1.3k
views
Doubt with snippy-multi reference
snippy-multi Snippy
2.5 years ago by SushiRoll ▴ 140
1
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0
replies
1.6k
views
Answer: Answer: How to download a genome assembly from the NCBI website?
2.5 years ago by SushiRoll ▴ 140
0
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0
replies
461
views
Problems installing PlasClass
PlasClass
2.5 years ago by SushiRoll ▴ 140
2
votes
1
reply
1.4k
views
Comment: Comment: How to analyse multiple files in FastQC
2.6 years ago by SushiRoll ▴ 140
63 results • Page 1 of 2
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