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278
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Comment: Comment: Remove especific reads from a metagenomic sequencing run
3 months ago by SushiRoll ▴ 140
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0
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416
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Answer: Answer: Relative abundance of plasmid DNA content in each sample
3 months ago by SushiRoll ▴ 140
1
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2
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278
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Remove specific reads from a metagenomic sequencing run
metagenomics
updated 3 months ago by 7.0k • written 3 months ago by ▴ 140
0
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0
replies
258
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Comparison between Bracken outputs
Bracken Kraken Taxonomy
7 months ago by SushiRoll ▴ 140
0
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1
reply
775
views
Comment: Comment: Problems running Roary
updated 10 months ago by 44k • written 10 months ago by ▴ 140
0
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3
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775
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Problems running Roary
pangenome Roary
updated 10 months ago by 44k • written 10 months ago by ▴ 140
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0
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550
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Comment: Comment: Proper HTSeq usage on bacterial genome. Don't quite understand --t
13 months ago by SushiRoll ▴ 140
2
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2
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550
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Proper HTSeq usage on bacterial genome. Don't quite understand --t
RNAseq HTSeq
13 months ago by SushiRoll ▴ 140
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0
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1.4k
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Comment: Comment: Kraken2 is falsely assigning Klebsiella
13 months ago by SushiRoll ▴ 140
1
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1
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1.4k
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Comment: Comment: Kraken2 is falsely assigning Klebsiella
13 months ago by SushiRoll ▴ 140
4
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4
replies
1.4k
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Kraken2 is falsely assigning Klebsiella
taxonomy Kraken2
13 months ago by SushiRoll ▴ 140
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2
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1.8k
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Comment: Comment: Highly inflated p-values in GWAS by regenie
14 months ago by SushiRoll ▴ 140
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0
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914
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Comment: Comment: Kraken2 recovering only classified reads
14 months ago by SushiRoll ▴ 140
2
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2
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914
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Kraken2 recovering only classified reads
Kraken2 taxonomy classification
14 months ago by SushiRoll ▴ 140
1
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0
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1.0k
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Comment: Comment: How to determine number of SNPs called?
15 months ago by SushiRoll ▴ 140
0
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1
reply
1.0k
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Comment: Comment: How to determine number of SNPs called?
15 months ago by SushiRoll ▴ 140
1
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3
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1.0k
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How to determine number of SNPs called?
Snippy SNP
15 months ago by SushiRoll ▴ 140
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3
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4.0k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 24 months ago by ▴ 140
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0
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872
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Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
18 months ago by SushiRoll ▴ 140
0
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1
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872
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Comment: Comment: Bacterial metatransciptome antimicrobial resistance genes workflow?
18 months ago by SushiRoll ▴ 140
1
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4
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872
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Bacterial metatransciptome antimicrobial resistance genes workflow?
RNAseq metatranscriptomics
18 months ago by SushiRoll ▴ 140
0
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0
replies
703
views
Comment: Comment: Is there a SILVA database version with only prokaryotes?
19 months ago by SushiRoll ▴ 140
0
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2
replies
703
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Is there a SILVA database version with only prokaryotes?
taxonomy SILVA 16S
19 months ago by SushiRoll ▴ 140
0
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0
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418
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Inferring relative gene abundance from short reads
metagenomics read 16S short mapping
19 months ago by SushiRoll ▴ 140
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0
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1.1k
views
Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
20 months ago by SushiRoll ▴ 140
0
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1
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1.1k
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Comment: Comment: How many refseqs are in refseq.genomes.k21.s1000.msh?
20 months ago by SushiRoll ▴ 140
2
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5
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1.1k
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How many refseqs are in refseq.genomes.k21.s1000.msh?
mash refseq
20 months ago by SushiRoll ▴ 140
0
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1
reply
1.6k
views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
21 months ago by SushiRoll ▴ 140
1
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1
reply
1.0k
views
Answer: Answer: Genome data visualization
21 months ago by SushiRoll ▴ 140
0
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0
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945
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Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
22 months ago by SushiRoll ▴ 140
0
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1
reply
945
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Comment: Comment: Retrieve specific fasta sequences from a group of assemblies
22 months ago by SushiRoll ▴ 140
2
votes
4
replies
945
views
Retrieve specific fasta sequences from a group of assemblies
CDS gene sequence
22 months ago by SushiRoll ▴ 140
1
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0
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519
views
Enzyme substrate prediction - where to start?
enzyme substrate Protein docking
22 months ago by SushiRoll ▴ 140
0
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0
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459
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NMDS from SNP distance matrix
NMDS SNP
22 months ago by SushiRoll ▴ 140
0
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0
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1.1k
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Comment: Comment: Need to compare two proteins
23 months ago by SushiRoll ▴ 140
6
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1
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1.1k
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Answer: Answer: Need to compare two proteins
23 months ago by SushiRoll ▴ 140
0
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0
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1.9k
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Comment: Comment: How can I trim this data using Trimmomatic?
23 months ago by SushiRoll ▴ 140
0
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1
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1.9k
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Answer: Answer: How can I trim this data using Trimmomatic?
23 months ago by SushiRoll ▴ 140
0
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0
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930
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Comment: Comment: How many SNPs are too many?
23 months ago by SushiRoll ▴ 140
0
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1
reply
930
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Comment: Comment: How many SNPs are too many?
23 months ago by SushiRoll ▴ 140
0
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4
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930
views
How many SNPs are too many?
snp
23 months ago by SushiRoll ▴ 140
0
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0
replies
4.0k
views
Comment: Comment: Discussion question: Cutoff for SNP phylogeny
24 months ago by SushiRoll ▴ 140
0
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0
replies
496
views
Using -fconst to run IQTree
IQtree phylogeny
24 months ago by SushiRoll ▴ 140
1
vote
0
replies
747
views
Snippy core output
SNP Snippy-core Snippy
2.0 years ago by SushiRoll ▴ 140
0
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0
replies
419
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qPCR and HT-PCR inconsistency
HT-PCR qPCR
2.0 years ago by SushiRoll ▴ 140
0
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0
replies
1.1k
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Comment: Comment: Doubt with snippy-multi reference
2.1 years ago by SushiRoll ▴ 140
2
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2
replies
1.1k
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Doubt with snippy-multi reference
snippy-multi Snippy
2.1 years ago by SushiRoll ▴ 140
1
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0
replies
1.2k
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Answer: Answer: How to download a genome assembly from the NCBI website?
2.1 years ago by SushiRoll ▴ 140
0
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0
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407
views
Problems installing PlasClass
PlasClass
2.1 years ago by SushiRoll ▴ 140
2
votes
1
reply
1.1k
views
Comment: Comment: How to analyse multiple files in FastQC
2.1 years ago by SushiRoll ▴ 140
63 results • Page 1 of 2
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