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Comment: Comment: How to do clustering of SNPs according to linkage disequilibrium (r2) values?
2.3 years ago by Raju • 0
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2
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1.0k
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Comment: Comment: How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
2.3 years ago by Raju • 0
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4
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1.0k
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How to Extract SNPs from Linkage Disequilibrium data with r2 > 0.6 threshold?
plink LD SNP
updated 2.3 years ago by ▴ 60 • written 2.3 years ago by • 0
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0
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431
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Get all SNPs that are high in Linkage Disequilibrium for set of SNPs
plink LD linkagedisequilibrium snps
2.3 years ago by Raju • 0
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0
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6.3k
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Answer: Answer: [SOLVED] Get LD data for any two SNPs
2.3 years ago by Raju • 0
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1
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493
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How Can I Find SNP id from Chromosome Position?
plink python gwas chromosome
updated 2.4 years ago by 164k • written 2.4 years ago by • 0
2
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1
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471
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I am trying to convert a tab file to bed what is the best command to do this?
plink gwas
updated 2.4 years ago by 164k • written 2.4 years ago by • 0
0
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1
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684
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Data Description of Output of .glm.linear file
plink glm plink2 linear
updated 2.5 years ago by 2.9k • written 2.5 years ago by • 0
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0
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460
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How to Calculate GWAS Summary Statistics?
plink GWAS
2.5 years ago by Raju • 0
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0
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410
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How to Calcualte "Effect Size" and "Effect Allele" of each SNP
EffectAllele EffectSize plink allele gwas
2.5 years ago by Raju • 0
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1
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668
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How to find Polygenic Risk Scores?
plink PRSice2 PolygenicRiskScore vcf
updated 2.5 years ago by ▴ 160 • written 2.5 years ago by • 0
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0
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4.0k
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Comment: Comment: How To Generate .Dat File For Imputation In Mach??
2.5 years ago by Raju • 0
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0
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389
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How to convert .bed/.bim/.fam file to .dat file to run --dosage command to get INFO
plink dosage
updated 20 months ago by 44k • written 2.5 years ago by • 0
0
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1
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648
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Comment: Comment: Which data files are required to find GWAS summary statistics?
2.5 years ago by Raju • 0
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3
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648
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Which data files are required to find GWAS summary statistics?
plink
updated 2.5 years ago by 2.9k • written 2.5 years ago by • 0
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1
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468
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How to Extract Values for SNPs by each chromosome and position using --window
plink
updated 2.5 years ago by 164k • written 2.5 years ago by • 0
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0
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390
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Extact SNPs ID's and their Values with IID, Additive and dominance components
plink
2.6 years ago by Raju • 0
0
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1
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614
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Additive and dominance components for .ped file
plink
updated 2.6 years ago by 11k • written 2.6 years ago by • 0
0
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1
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556
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How tp Extract SNPs values
plink
updated 2.6 years ago by 12k • written 2.6 years ago by • 0
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0
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321
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Command to extract SNPs rs17782313 from VCF file using bcftool
bcftools
2.7 years ago by Raju • 0
1
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1
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1.2k
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How to Extract Sample Id's from .bed|.fam|.bim files and be able to translate sample IDs from GWAS IDs to IDs of a given cohort
plink
updated 2.7 years ago by 12k • written 2.7 years ago by • 0
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1
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516
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How to Select data for a SNP for all samples using PLINK
plink
updated 2.7 years ago by 12k • written 2.7 years ago by • 0
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0
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802
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Comment: Comment: How to extract a subset of samples from plink .bed files
2.7 years ago by Raju • 0
0
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1
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802
views
Comment: Comment: How to extract a subset of samples from plink .bed files
2.7 years ago by Raju • 0
0
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3
replies
802
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How to extract a subset of samples from plink .bed files
plink
2.7 years ago by Raju • 0
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