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764
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BCFtools isec output vs BCFtools query
bcftools VCF strelka2 htslib
updated 15 months ago by 44k • written 15 months ago by ▴ 260
3
votes
1
reply
878
views
Annotate CDS and UTR given transcript
annotation GFF GFFCompare CDS transcript
20 months ago by gtho123 ▴ 260
3
votes
0
replies
878
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Answer: Answer: Annotate CDS and UTR given transcript
20 months ago by gtho123 ▴ 260
0
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1
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7.8k
views
Comment: C: Genomic Features - makeTranscriptDbFromGFF()
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 260
0
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0
replies
21k
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Comment: C: MDS plots with R
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 260
3
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0
replies
21k
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Answer: A: MDS plots with R
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 260
0
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0
replies
2.4k
views
Comment: C: Map ESTs to re annotated genome to get updated gene annotations
updated 5.0 years ago by 44k • written 10.6 years ago by ▴ 260
6
votes
2
replies
5.7k
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How do you extract raw counts from CUFFLINKS?
RNA-Seq
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 260
0
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2
replies
2.4k
views
SolexaQA++ lengthsort - c output
next-gen sequencing
updated 5.6 years ago by 20 • written 7.3 years ago by ▴ 260
1
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1
reply
2.3k
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Answer: A: R programming: match and rearrange
updated 6.3 years ago by 44k • written 9.6 years ago by ▴ 260
0
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2
replies
2.2k
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Problem with generating UCSCs refGene format
software-error refgene
updated 2.9 years ago by 44k • written 10.1 years ago by ▴ 260
3
votes
1
reply
3.9k
views
Use Bedtools to extract stranded read depth from BAM files
RNA-Seq Bedtools alignment
updated 8.3 years ago by ★ 3.9k • written 8.3 years ago by ▴ 260
2
votes
2
replies
2.4k
views
Map ESTs to re annotated genome to get updated gene annotations
ESTs Genome Mapping Annotation
updated 9.0 years ago by 20 • written 10.6 years ago by ▴ 260
2
votes
3
replies
4.9k
views
Forge a BSgenome data package
Bioconductor BSgenome Biostrings Gviz
updated 3.3 years ago by ▴ 140 • written 9.3 years ago by ▴ 260
1
vote
2
replies
4.9k
views
Generate genotype specific FASTA sequences from VCF file and reference sequence
SNP sequence gatk
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 260
0
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1
reply
2.3k
views
Sequence clustering and motif identification.
Clustering alignment sequence motifs
updated 22 months ago by 44k • written 9.6 years ago by ▴ 260
1
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0
replies
4.9k
views
Answer: Answer: Generate genotype specific FASTA sequences from VCF file and reference sequence
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 260
3
votes
0
replies
2.1k
views
Answer: Answer: Visualize a genome
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 260
1
vote
1
reply
8.6k
views
Answer: Answer: Help with graphing ANOVA results in R
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 260
0
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1
reply
8.6k
views
Comment: Comment: Help with graphing ANOVA results in R
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 260
4
votes
2
replies
1.8k
views
What is this alignment program? [Pictured]
alignment-software bwa
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 260
0
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0
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2.2k
views
Comment: C: Problem with generating UCSCs refGene format
10.1 years ago by gtho123 ▴ 260
5
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1
reply
7.5k
views
Answer: A: Bioconductor - Error : Function found is not S4 generic
updated 3.8 years ago by 44k • written 10.2 years ago by ▴ 260
6
votes
3
replies
7.5k
views
Bioconductor - Error : Function found is not S4 generic
R bioconducto softwareerror
updated 3.8 years ago by 44k • written 10.2 years ago by ▴ 260
0
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1
reply
7.8k
views
Comment: Comment: Genomic Features - makeTranscriptDbFromGFF()
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 260
0
votes
1
reply
7.8k
views
Comment: Comment: Genomic Features - makeTranscriptDbFromGFF()
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 260
0
votes
0
replies
7.8k
views
Comment: C: Genomic Features - makeTranscriptDbFromGFF()
10.5 years ago by gtho123 ▴ 260
4
votes
14
replies
7.8k
views
Genomic Features - makeTranscriptDbFromGFF()
genome software-error R RNA-Seq bioconductor
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 260
0
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1
reply
7.8k
views
Comment: C: Genomic Features - makeTranscriptDbFromGFF()
10.5 years ago by gtho123 ▴ 260
0
votes
1
reply
21k
views
Comment: C: MDS plots with R
10.5 years ago by gtho123 ▴ 260
5
votes
4
replies
10k
views
gffread is not working
software-error next-gen
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 260
0
votes
1
reply
10k
views
Answer: A: gffread is not working
10.6 years ago by gtho123 ▴ 260
3
votes
6
replies
4.7k
views
Identify Duplicates In Two Fasta Files But Not Merge Them
duplicates fasta
updated 3.1 years ago by 44k • written 10.7 years ago by ▴ 260
0
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1
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4.7k
views
Comment: C: Identify Duplicates In Two Fasta Files But Not Merge Them
10.7 years ago by gtho123 ▴ 260
0
votes
1
reply
4.7k
views
Comment: C: Identify Duplicates In Two Fasta Files But Not Merge Them
10.7 years ago by gtho123 ▴ 260
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