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411
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Where to find WGS, metagenome data for obesity group?
HMP microbiome data NCBI metagenomics
updated 7 weeks ago by ▴ 90 • written 3 months ago by ▴ 70
0
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1
reply
457
views
Comment: Comment: HMP dataset download issue (403 error)
3 months ago by Emily ▴ 70
1
vote
3
replies
457
views
HMP dataset download issue (403 error)
HMP dataset microbiome
updated 3 months ago by 152k • written 3 months ago by ▴ 70
1
vote
10
replies
4.2k
views
Scanpy Pearson residual PCA error
python scRNA scanpy PCA
updated 18 months ago by • 0 • written 2.8 years ago by ▴ 70
4
votes
2
replies
1.9k
views
GSEApy plot TypeError
gsea python DEG
updated 19 months ago by 45k • written 20 months ago by ▴ 70
1
vote
1
reply
2.1k
views
Comment: Comment: Phyloseq sample data error: non-zero dimensions?
20 months ago by Emily ▴ 70
1
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3
replies
2.1k
views
Phyloseq sample data error: non-zero dimensions?
R object phyloseq gwas
updated 20 months ago by ▴ 420 • written 20 months ago by ▴ 70
1
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1
reply
1.5k
views
Comment: Comment: pyDESeq2 Index Error?
20 months ago by Emily ▴ 70
1
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3
replies
1.5k
views
pyDESeq2 Index Error?
R python pyDESeq2 DESeq2
20 months ago by Emily ▴ 70
0
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0
replies
2.4k
views
Comment: Comment: Trimmomatic .jar not included anymore?
21 months ago by Emily ▴ 70
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0
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2.4k
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Comment: Comment: Trimmomatic .jar not included anymore?
21 months ago by Emily ▴ 70
2
votes
5
replies
2.4k
views
Trimmomatic .jar not included anymore?
trimmomatic ubuntu linux
updated 21 months ago by ▴ 100 • written 21 months ago by ▴ 70
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0
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1.7k
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Comment: Comment: Cellranger pipeline 3.1.0 demultiplexing (cellranger demux)
2.3 years ago by Emily ▴ 70
1
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2
replies
1.7k
views
Cellranger pipeline 3.1.0 demultiplexing (cellranger demux)
scRNA python cellranger
2.3 years ago by Emily ▴ 70
0
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0
replies
501
views
Is dropout a big concern (or factor) when analysing single cell RNAseq?
single dropout cell scRNA
2.6 years ago by Emily ▴ 70
1
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1
reply
729
views
How to find nuclear localized genes from scRNA-seq UMI data?
scanpy anndata scRNA python rna
updated 2.7 years ago by 5.1k • written 2.7 years ago by ▴ 70
0
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0
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1.0k
views
Comment: Comment: Is there a tutorial/ demo on single cell nuclei-seq analysis
2.7 years ago by Emily ▴ 70
1
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2
replies
1.0k
views
Is there a tutorial/ demo on single cell nuclei-seq analysis
cell seq single sNuc-seq nuclei-seq sn-RNA
2.7 years ago by Emily ▴ 70
1
vote
1
reply
2.9k
views
How to subset anndata by clusters and their gene markers?
anndata python scanpy scrna scvi
updated 2.8 years ago by ▴ 650 • written 2.8 years ago by ▴ 70
0
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0
replies
6.8k
views
Comment: Comment: How to subset anndata based on variable
2.8 years ago by Emily ▴ 70
1
vote
2
replies
6.8k
views
How to subset anndata based on variable
python scRNA AnnData scanpy pandas
2.8 years ago by Emily ▴ 70
0
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0
replies
4.2k
views
Comment: Comment: Scanpy Pearson residual PCA error
2.8 years ago by Emily ▴ 70
0
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1
reply
4.2k
views
Comment: Comment: Scanpy Pearson residual PCA error
2.8 years ago by Emily ▴ 70
0
votes
1
reply
4.2k
views
Comment: Comment: Scanpy Pearson residual PCA error
2.8 years ago by Emily ▴ 70
0
votes
0
replies
4.2k
views
Comment: Comment: Scanpy Pearson residual PCA error
updated 21 months ago by 45k • written 2.8 years ago by ▴ 70
1
vote
0
replies
4.2k
views
Comment: Comment: How to adjust y-axis scale on scanpy scatter plot
2.8 years ago by Emily ▴ 70
4
votes
3
replies
4.2k
views
How to adjust y-axis scale on scanpy scatter plot
scRNA seq scanpy data RNA
updated 11 months ago by ▴ 30 • written 2.8 years ago by ▴ 70
0
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0
replies
1.2k
views
Comment: Comment: Does Cellranger filter out doublet?
2.8 years ago by Emily ▴ 70
1
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2
replies
1.2k
views
Does Cellranger filter out doublet?
cellranger scRNA
2.8 years ago by Emily ▴ 70
0
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0
replies
4.2k
views
Comment: Comment: SRA not splitting when trying to download fastq
2.9 years ago by Emily ▴ 70
0
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1
reply
4.2k
views
Comment: Comment: SRA not splitting when trying to download fastq
2.9 years ago by Emily ▴ 70
0
votes
1
reply
4.2k
views
Comment: Comment: SRA not splitting when trying to download fastq
2.9 years ago by Emily ▴ 70
0
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1
reply
4.2k
views
Comment: Comment: SRA not splitting when trying to download fastq
2.9 years ago by Emily ▴ 70
6
votes
12
replies
4.2k
views
SRA not splitting when trying to download fastq
SRA FASTQ Linux scRNA
updated 2.9 years ago by ▴ 430 • written 2.9 years ago by ▴ 70
0
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0
replies
1.5k
views
Comment: Comment: Does Seurat have Poisson normalization method?
2.9 years ago by Emily ▴ 70
0
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1
reply
1.5k
views
Comment: Comment: Does Seurat have Poisson normalization method?
2.9 years ago by Emily ▴ 70
3
votes
4
replies
1.5k
views
Does Seurat have Poisson normalization method?
R scRNA seurat
2.9 years ago by Emily ▴ 70
0
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0
replies
3.2k
views
Comment: Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.9 years ago by Emily ▴ 70
0
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0
replies
3.2k
views
Comment: Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.9 years ago by Emily ▴ 70
0
votes
1
reply
3.2k
views
Comment: Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.9 years ago by Emily ▴ 70
0
votes
5
replies
3.2k
views
scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann Data?
RNA scRNA single-cell Scanpy
2.9 years ago by Emily ▴ 70
1
vote
1
reply
710
views
Looking for Bulk RNA seq PBMC data
rba genome rna-seq
updated 3.0 years ago by 45k • written 3.1 years ago by ▴ 70
2
votes
2
replies
1.5k
views
In need of help: Error in open.connection (file), opening tsv.gz & mtx.gz files
dataframe Python R Studio
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 70
0
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0
replies
2.4k
views
Comment: Comment: looking for human PBMC bulk cell seq data and scRNA data
3.1 years ago by Emily ▴ 70
0
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1
reply
2.4k
views
Comment: Comment: looking for human PBMC bulk cell seq data and scRNA data
3.1 years ago by Emily ▴ 70
1
vote
11
replies
2.4k
views
looking for human PBMC bulk cell seq data and scRNA data
bulk RNA single-cell scRNA data
3.1 years ago by Emily ▴ 70
0
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1
reply
2.4k
views
Comment: Comment: looking for human PBMC bulk cell seq data and scRNA data
3.1 years ago by Emily ▴ 70
0
votes
0
replies
2.4k
views
Comment: Comment: looking for human PBMC bulk cell seq data
3.1 years ago by Emily ▴ 70
1
vote
1
reply
2.2k
views
how to combine barcodes features matrix files into combined matrix
R data
updated 3.1 years ago by 88k • written 3.1 years ago by ▴ 70
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