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1
vote
10
replies
3.1k
views
Scanpy Pearson residual PCA error
python
scRNA
scanpy
PCA
updated 11 months ago by
Maƫlick
• 0 • written 2.3 years ago by
Emily
▴ 70
4
votes
2
replies
1.3k
views
GSEApy plot TypeError
gsea
python
DEG
updated 12 months ago by
Ram
44k • written 13 months ago by
Emily
▴ 70
1
vote
1
reply
1.5k
views
Comment:
Comment: Phyloseq sample data error: non-zero dimensions?
13 months ago by
Emily
▴ 70
1
vote
3
replies
1.5k
views
Phyloseq sample data error: non-zero dimensions?
R
object
phyloseq
gwas
updated 13 months ago by
Chris Dean
▴ 420 • written 13 months ago by
Emily
▴ 70
1
vote
1
reply
1.1k
views
Comment:
Comment: pyDESeq2 Index Error?
13 months ago by
Emily
▴ 70
1
vote
3
replies
1.1k
views
pyDESeq2 Index Error?
R
python
pyDESeq2
DESeq2
13 months ago by
Emily
▴ 70
0
votes
0
replies
1.7k
views
Comment:
Comment: Trimmomatic .jar not included anymore?
14 months ago by
Emily
▴ 70
0
votes
0
replies
1.7k
views
Comment:
Comment: Trimmomatic .jar not included anymore?
14 months ago by
Emily
▴ 70
2
votes
5
replies
1.7k
views
Trimmomatic .jar not included anymore?
trimmomatic
ubuntu
linux
updated 14 months ago by
petebio
▴ 100 • written 14 months ago by
Emily
▴ 70
0
votes
0
replies
1.3k
views
Comment:
Comment: Cellranger pipeline 3.1.0 demultiplexing (cellranger demux)
20 months ago by
Emily
▴ 70
1
vote
2
replies
1.3k
views
Cellranger pipeline 3.1.0 demultiplexing (cellranger demux)
scRNA
python
cellranger
20 months ago by
Emily
▴ 70
0
votes
0
replies
433
views
Is dropout a big concern (or factor) when analysing single cell RNAseq?
single
dropout
cell
scRNA
2.1 years ago by
Emily
▴ 70
1
vote
1
reply
622
views
How to find nuclear localized genes from scRNA-seq UMI data?
scanpy
anndata
scRNA
python
rna
updated 2.1 years ago by
Matthias Zepper
5.0k • written 2.1 years ago by
Emily
▴ 70
0
votes
0
replies
816
views
Comment:
Comment: Is there a tutorial/ demo on single cell nuclei-seq analysis
2.1 years ago by
Emily
▴ 70
1
vote
2
replies
816
views
Is there a tutorial/ demo on single cell nuclei-seq analysis
cell
seq
single
sNuc-seq
nuclei-seq
sn-RNA
2.1 years ago by
Emily
▴ 70
1
vote
1
reply
2.2k
views
How to subset anndata by clusters and their gene markers?
anndata
python
scanpy
scrna
scvi
updated 2.2 years ago by
zorbax
▴ 650 • written 2.2 years ago by
Emily
▴ 70
0
votes
0
replies
5.8k
views
Comment:
Comment: How to subset anndata based on variable
2.2 years ago by
Emily
▴ 70
1
vote
2
replies
5.8k
views
How to subset anndata based on variable
python
scRNA
AnnData
scanpy
pandas
2.2 years ago by
Emily
▴ 70
0
votes
0
replies
3.1k
views
Comment:
Comment: Scanpy Pearson residual PCA error
2.3 years ago by
Emily
▴ 70
0
votes
1
reply
3.1k
views
Comment:
Comment: Scanpy Pearson residual PCA error
2.3 years ago by
Emily
▴ 70
0
votes
1
reply
3.1k
views
Comment:
Comment: Scanpy Pearson residual PCA error
2.3 years ago by
Emily
▴ 70
0
votes
0
replies
3.1k
views
Comment:
Comment: Scanpy Pearson residual PCA error
updated 14 months ago by
Ram
44k • written 2.3 years ago by
Emily
▴ 70
1
vote
0
replies
3.2k
views
Comment:
Comment: How to adjust y-axis scale on scanpy scatter plot
2.3 years ago by
Emily
▴ 70
4
votes
3
replies
3.2k
views
How to adjust y-axis scale on scanpy scatter plot
scRNA
seq
scanpy
data
RNA
updated 4 months ago by
jixiangj
▴ 30 • written 2.3 years ago by
Emily
▴ 70
0
votes
0
replies
996
views
Comment:
Comment: Does Cellranger filter out doublet?
2.3 years ago by
Emily
▴ 70
1
vote
2
replies
996
views
Does Cellranger filter out doublet?
cellranger
scRNA
2.3 years ago by
Emily
▴ 70
0
votes
0
replies
3.0k
views
Comment:
Comment: SRA not splitting when trying to download fastq
2.3 years ago by
Emily
▴ 70
0
votes
1
reply
3.0k
views
Comment:
Comment: SRA not splitting when trying to download fastq
2.3 years ago by
Emily
▴ 70
0
votes
1
reply
3.0k
views
Comment:
Comment: SRA not splitting when trying to download fastq
2.3 years ago by
Emily
▴ 70
0
votes
1
reply
3.0k
views
Comment:
Comment: SRA not splitting when trying to download fastq
2.3 years ago by
Emily
▴ 70
6
votes
12
replies
3.0k
views
SRA not splitting when trying to download fastq
SRA
FASTQ
Linux
scRNA
updated 2.3 years ago by
tomas4482
▴ 430 • written 2.3 years ago by
Emily
▴ 70
0
votes
0
replies
1.1k
views
Comment:
Comment: Does Seurat have Poisson normalization method?
2.3 years ago by
Emily
▴ 70
0
votes
1
reply
1.1k
views
Comment:
Comment: Does Seurat have Poisson normalization method?
2.3 years ago by
Emily
▴ 70
3
votes
4
replies
1.1k
views
Does Seurat have Poisson normalization method?
R
scRNA
seurat
2.3 years ago by
Emily
▴ 70
0
votes
0
replies
2.8k
views
Comment:
Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.3 years ago by
Emily
▴ 70
0
votes
0
replies
2.8k
views
Comment:
Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.3 years ago by
Emily
▴ 70
0
votes
1
reply
2.8k
views
Comment:
Comment: scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann
2.3 years ago by
Emily
▴ 70
0
votes
5
replies
2.8k
views
scRNA read count is in csv, not '.h5ad' format, do I need to convert it into Ann Data?
RNA
scRNA
single-cell
Scanpy
2.3 years ago by
Emily
▴ 70
1
vote
1
reply
575
views
Looking for Bulk RNA seq PBMC data
rba
genome
rna-seq
updated 2.4 years ago by
Ram
44k • written 2.5 years ago by
Emily
▴ 70
2
votes
2
replies
1.2k
views
In need of help: Error in open.connection (file), opening tsv.gz & mtx.gz files
dataframe
Python
R
Studio
updated 2.5 years ago by
cpad0112
21k • written 2.5 years ago by
Emily
▴ 70
0
votes
0
replies
1.6k
views
Comment:
Comment: looking for human PBMC bulk cell seq data and scRNA data
2.5 years ago by
Emily
▴ 70
0
votes
1
reply
1.6k
views
Comment:
Comment: looking for human PBMC bulk cell seq data and scRNA data
2.5 years ago by
Emily
▴ 70
1
vote
11
replies
1.6k
views
looking for human PBMC bulk cell seq data and scRNA data
bulk
RNA
single-cell
scRNA
data
2.5 years ago by
Emily
▴ 70
0
votes
1
reply
1.6k
views
Comment:
Comment: looking for human PBMC bulk cell seq data and scRNA data
2.5 years ago by
Emily
▴ 70
0
votes
0
replies
1.6k
views
Comment:
Comment: looking for human PBMC bulk cell seq data
2.5 years ago by
Emily
▴ 70
1
vote
1
reply
1.7k
views
how to combine barcodes features matrix files into combined matrix
R
data
updated 2.5 years ago by
ATpoint
85k • written 2.5 years ago by
Emily
▴ 70
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