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353
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Interprete plot of dispersion estimation by DESeq2
dispersion DEXseq DESeq2
updated 8 months ago by 164k • written 8 months ago by ▴ 40
5
votes
8
replies
4.7k
views
Distinguish between forward strand, plus strand, sense strand
pysam strand star sam
updated 14 months ago by • 0 • written 2.3 years ago by ▴ 40
0
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0
replies
859
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Comment: Comment: Error in cellranger count
17 months ago by tien ▴ 40
0
votes
2
replies
859
views
Error in cellranger count
cellranger
17 months ago by tien ▴ 40
3
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1
reply
684
views
DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
dispersion DEXseq R
2.1 years ago by tien ▴ 40
1
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0
replies
684
views
Answer: Answer: DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
2.1 years ago by tien ▴ 40
0
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1
reply
2.6k
views
PrepSCTFindMarkers() before Findmarker() by Seurat
findmarker seurat PrepSCTFindMarkers
updated 2.0 years ago by ▴ 10 • written 2.2 years ago by ▴ 40
0
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0
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927
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Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
2.3 years ago by tien ▴ 40
0
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1
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927
views
Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
2.3 years ago by tien ▴ 40
0
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4
replies
927
views
Sudden drop in coverage in single-cell RNA-sequencing data
singlecell
2.3 years ago by tien ▴ 40
0
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0
replies
886
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Comment: Comment: Difference in sashimi plot between single-cell versus bulk RNA-seq data
2.3 years ago by tien ▴ 40
4
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3
replies
886
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Difference in sashimi plot between single-cell versus bulk RNA-seq data
pysashimi
2.3 years ago by tien ▴ 40
0
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0
replies
749
views
Comment: Comment: Plot splicing summary using ggbio
2.3 years ago by tien ▴ 40
0
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2
replies
749
views
Plot splicing summary using ggbio
splicing ggbio
2.3 years ago by tien ▴ 40
0
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0
replies
4.7k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.3 years ago by tien ▴ 40
0
votes
1
reply
4.7k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.3 years ago by tien ▴ 40
0
votes
1
reply
4.7k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.3 years ago by tien ▴ 40
0
votes
0
replies
4.7k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
2.3 years ago by tien ▴ 40
0
votes
0
replies
408
views
Difference between query_alignment_length, template_length, reference_length
pysam
2.4 years ago by tien ▴ 40
0
votes
2
replies
764
views
How Cell ranger count UMI from intronic region in the latest version
cellranger
updated 24 months ago by 44k • written 2.4 years ago by ▴ 40
0
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0
replies
1.8k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
2.4 years ago by tien ▴ 40
0
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1
reply
1.8k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
2.4 years ago by tien ▴ 40
0
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0
replies
1.8k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
2.4 years ago by tien ▴ 40
0
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3
replies
1.8k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
2.4 years ago by tien ▴ 40
3
votes
7
replies
1.8k
views
UMI and CB for the same sample but different lane by 10X single-cell RNA sequencing
10X RNA single-cell
2.4 years ago by tien ▴ 40
0
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0
replies
1.0k
views
Comment: Comment: Detecting duplicated UMI in BAM file
2.4 years ago by tien ▴ 40
0
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2
replies
1.0k
views
Detecting duplicated UMI in BAM file
UMI BAM
2.4 years ago by tien ▴ 40
1
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4
replies
1.3k
views
Read is confidently mapped to the transcriptome in Cell Ranger
cellranger intergenic intron transcriptome alignment
updated 2.4 years ago by 147k • written 2.4 years ago by ▴ 40
0
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0
replies
1.3k
views
Answer: Answer: Read is confidently mapped to the transcriptome in Cell Ranger
2.4 years ago by tien ▴ 40
0
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1
reply
1.3k
views
Comment: Comment: Read is confidently mapped to the transcriptome in Cell Ranger
2.4 years ago by tien ▴ 40
0
votes
0
replies
1.2k
views
Comment: Comment: Positions of different gene id are overlapped
2.5 years ago by tien ▴ 40
0
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1
reply
1.2k
views
Comment: Comment: Positions of different gene id are overlapped
2.5 years ago by tien ▴ 40
0
votes
0
replies
1.2k
views
Comment: Comment: Positions of different gene id are overlapped
2.5 years ago by tien ▴ 40
4
votes
6
replies
1.2k
views
Positions of different gene id are overlapped
cellranger gtf
2.5 years ago by tien ▴ 40
0
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0
replies
2.4k
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Comment: Comment: Create singlecellexperiment object with colData
2.5 years ago by tien ▴ 40
0
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0
replies
1.9k
views
Comment: Comment: Count number of unique cell barcode (CB) in bam file
2.5 years ago by tien ▴ 40
2
votes
2
replies
1.9k
views
Count number of unique cell barcode (CB) in bam file
cell-ranger samtools BAM cell-barcode
updated 17 months ago by 44k • written 2.5 years ago by ▴ 40
0
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1
reply
2.4k
views
Comment: Comment: Create singlecellexperiment object with colData
2.5 years ago by tien ▴ 40
0
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0
replies
2.4k
views
Comment: Comment: Create singlecellexperiment object with colData
2.5 years ago by tien ▴ 40
0
votes
1
reply
2.4k
views
Comment: Comment: Create singlecellexperiment object with colData
2.5 years ago by tien ▴ 40
4
votes
8
replies
2.4k
views
Create singlecellexperiment object with colData
singlecellexperiment
2.5 years ago by tien ▴ 40
0
votes
0
replies
443
views
Cannot map some GENEID to SEQNAME from EnsDb.Hsapiens.v86 database
annotation cellranger
2.5 years ago by tien ▴ 40
0
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1
reply
825
views
Comment: Comment: Extract bed file of uwanted chromosome names and positions from bam file
2.5 years ago by tien ▴ 40
0
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3
replies
825
views
Extract bed file of uwanted chromosome names and positions from bam file
bed bam samtools
updated 20 months ago by 44k • written 2.5 years ago by ▴ 40
44 results • Page 1 of 1
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