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225
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Interprete plot of dispersion estimation by DESeq2
dispersion DEXseq DESeq2
updated 8 weeks ago by 161k • written 8 weeks ago by ▴ 10
5
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8
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3.5k
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Distinguish between forward strand, plus strand, sense strand
pysam strand star sam
updated 8 months ago by • 0 • written 22 months ago by ▴ 10
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0
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697
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Comment: Comment: Error in cellranger count
11 months ago by tien ▴ 10
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2
replies
697
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Error in cellranger count
cellranger
11 months ago by tien ▴ 10
0
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1
reply
529
views
DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
dispersion DEXseq R
19 months ago by tien ▴ 10
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0
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529
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Answer: Answer: DEXseq estimateDispersions() returns error `replacement has 1 row, data has 0`
19 months ago by tien ▴ 10
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1
reply
2.2k
views
PrepSCTFindMarkers() before Findmarker() by Seurat
findmarker seurat PrepSCTFindMarkers
updated 18 months ago by ▴ 10 • written 20 months ago by ▴ 10
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0
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744
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Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
21 months ago by tien ▴ 10
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1
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744
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Comment: Comment: Sudden drop in coverage in single-cell RNA-sequencing data
21 months ago by tien ▴ 10
0
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4
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744
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Sudden drop in coverage in single-cell RNA-sequencing data
singlecell
21 months ago by tien ▴ 10
0
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0
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749
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Comment: Comment: Difference in sashimi plot between single-cell versus bulk RNA-seq data
21 months ago by tien ▴ 10
4
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3
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749
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Difference in sashimi plot between single-cell versus bulk RNA-seq data
pysashimi
21 months ago by tien ▴ 10
0
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0
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594
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Comment: Comment: Plot splicing summary using ggbio
21 months ago by tien ▴ 10
0
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2
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594
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Plot splicing summary using ggbio
splicing ggbio
21 months ago by tien ▴ 10
0
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0
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3.5k
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Comment: Comment: Distinguish between forward strand, plus strand, sense strand
21 months ago by tien ▴ 10
0
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1
reply
3.5k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
21 months ago by tien ▴ 10
0
votes
1
reply
3.5k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
22 months ago by tien ▴ 10
0
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0
replies
3.5k
views
Comment: Comment: Distinguish between forward strand, plus strand, sense strand
22 months ago by tien ▴ 10
0
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0
replies
332
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Difference between query_alignment_length, template_length, reference_length
pysam
23 months ago by tien ▴ 10
0
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2
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597
views
How Cell ranger count UMI from intronic region in the latest version
cellranger
updated 17 months ago by 43k • written 23 months ago by ▴ 10
0
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0
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1.4k
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Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
23 months ago by tien ▴ 10
0
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1
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1.4k
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Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
23 months ago by tien ▴ 10
0
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0
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1.4k
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Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
23 months ago by tien ▴ 10
0
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3
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1.4k
views
Comment: Comment: UMI and CB for the same sample but different lane by 10X single-cell RNA sequenc
23 months ago by tien ▴ 10
3
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7
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1.4k
views
UMI and CB for the same sample but different lane by 10X single-cell RNA sequencing
10X RNA single-cell
23 months ago by tien ▴ 10
0
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0
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875
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Comment: Comment: Detecting duplicated UMI in BAM file
23 months ago by tien ▴ 10
0
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2
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875
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Detecting duplicated UMI in BAM file
UMI BAM
23 months ago by tien ▴ 10
1
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4
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1.1k
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Read is confidently mapped to the transcriptome in Cell Ranger
cellranger intergenic intron transcriptome alignment
updated 23 months ago by 142k • written 23 months ago by ▴ 10
0
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0
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1.1k
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Answer: Answer: Read is confidently mapped to the transcriptome in Cell Ranger
23 months ago by tien ▴ 10
0
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1
reply
1.1k
views
Comment: Comment: Read is confidently mapped to the transcriptome in Cell Ranger
23 months ago by tien ▴ 10
0
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0
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988
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Comment: Comment: Positions of different gene id are overlapped
23 months ago by tien ▴ 10
0
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1
reply
988
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Comment: Comment: Positions of different gene id are overlapped
23 months ago by tien ▴ 10
0
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0
replies
988
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Comment: Comment: Positions of different gene id are overlapped
23 months ago by tien ▴ 10
4
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6
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988
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Positions of different gene id are overlapped
cellranger gtf
23 months ago by tien ▴ 10
0
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0
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2.1k
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Comment: Comment: Create singlecellexperiment object with colData
23 months ago by tien ▴ 10
0
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0
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1.5k
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Comment: Comment: Count number of unique cell barcode (CB) in bam file
23 months ago by tien ▴ 10
2
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2
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1.5k
views
Count number of unique cell barcode (CB) in bam file
cell-ranger samtools BAM cell-barcode
updated 11 months ago by 43k • written 23 months ago by ▴ 10
0
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1
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2.1k
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Comment: Comment: Create singlecellexperiment object with colData
23 months ago by tien ▴ 10
0
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0
replies
2.1k
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Comment: Comment: Create singlecellexperiment object with colData
23 months ago by tien ▴ 10
0
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1
reply
2.1k
views
Comment: Comment: Create singlecellexperiment object with colData
23 months ago by tien ▴ 10
4
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8
replies
2.1k
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Create singlecellexperiment object with colData
singlecellexperiment
23 months ago by tien ▴ 10
0
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0
replies
362
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Cannot map some GENEID to SEQNAME from EnsDb.Hsapiens.v86 database
annotation cellranger
2.0 years ago by tien ▴ 10
0
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1
reply
682
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Comment: Comment: Extract bed file of uwanted chromosome names and positions from bam file
2.0 years ago by tien ▴ 10
0
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3
replies
682
views
Extract bed file of uwanted chromosome names and positions from bam file
bed bam samtools
updated 14 months ago by 43k • written 2.0 years ago by ▴ 10
44 results • Page 1 of 1
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