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2
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2
replies
4.6k
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Advantages of Biobase's TRANSFAC over and above what is freely available?
TRANSFAC Transcription Regulation UCSC TFBS
updated 23 months ago by • 0 • written 10.6 years ago by ▴ 290
0
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2
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4.5k
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Comment: C: Help needed parsing VCF files
updated 5.0 years ago by 44k • written 10.5 years ago by ▴ 290
0
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0
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3.6k
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Comment: C: Making a Dictionary for all Possible Mutations
updated 5.0 years ago by 44k • written 10.6 years ago by ▴ 290
0
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1
reply
3.5k
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Comment: A: CNV analysis from a family of 4 exome sequences
updated 5.0 years ago by 44k • written 10.6 years ago by ▴ 290
2
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1
reply
2.5k
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Answer: A: Mutation protein program at the exactly point
updated 5.0 years ago by 44k • written 10.6 years ago by ▴ 290
0
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0
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9.5k
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Comment: C: Most effective way to merge individual VCF files into VCF files merged by chromo
updated 5.0 years ago by 44k • written 10.6 years ago by ▴ 290
12
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1
reply
73k
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Answer: A: VCF files: Change Chromosome Notation
updated 5.0 years ago by 44k • written 10.7 years ago by ▴ 290
3
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0
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3.0k
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Answer: A: Linkage disequilibrium plots
updated 5.0 years ago by 44k • written 10.7 years ago by ▴ 290
0
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0
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9.5k
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Comment: C: Most effective way to merge individual VCF files into VCF files merged by chromo
updated 5.2 years ago by 44k • written 10.6 years ago by ▴ 290
0
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0
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6.6k
views
Answer: A: How to interpret and extract from a Vcf file Genotype informations as values
updated 5.2 years ago by 44k • written 10.6 years ago by ▴ 290
1
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0
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2.4k
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Answer: A: Which Reference Index to use for Clinical Variants (SNPs and INDELs) Detection ?
updated 5.5 years ago by 44k • written 10.5 years ago by ▴ 290
7
votes
7
replies
9.5k
views
Most effective way to merge individual VCF files into VCF files merged by chromosome
VCF VCFmerge VCFtools merge Plinkseq
updated 6.1 years ago by 20 • written 10.6 years ago by ▴ 290
2
votes
2
replies
2.6k
views
Background information and recommendations for phasing ASW whole genomes
BEAGLE Phasing NGS
updated 3.2 years ago by 44k • written 10.6 years ago by ▴ 290
0
votes
1
reply
2.3k
views
Batch load in haploview
haploview commandline
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 290
0
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0
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2.3k
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Burden tests in plinkseq (v0.08) running exponentially slower with more variants?
plinkseq genetics association statistics
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 290
0
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0
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3.0k
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Comment: Comment: Making use of phased haplotypes in rare variant burden testing
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 290
9
votes
2
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3.0k
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Making use of phased haplotypes in rare variant burden testing
NGS Phasing Burden GWAS Haplotypes
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 290
0
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0
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2.3k
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Comment: C: Batch load in haploview
10.4 years ago by vlaufer ▴ 290
0
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1
reply
2.1k
views
Tools that represent standard output from local ancestry estimation software visually
local-ancestry ngs visualize gwas
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 290
0
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1
reply
2.3k
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Comment: C: Filter according to a list of snps, setting SNPs not found in data as missing
10.4 years ago by vlaufer ▴ 290
4
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3
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2.3k
views
Filter according to a list of snps, setting SNPs not found in data as missing
plink missing SNP GWAS
updated 3.0 years ago by 44k • written 10.4 years ago by ▴ 290
1
vote
1
reply
2.8k
views
Comment: Comment: File Containing LD-Pruned SNPs with MAF in CEU and YRI populations?
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 290
0
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0
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4.3k
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Answer: Answer: Unique SNP sharing between populations
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 290
3
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3
replies
2.8k
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File Containing LD-Pruned SNPs with MAF in CEU and YRI populations?
Local-Ancestry Linkage-Disequilibrium Admixture
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 290
2
votes
0
replies
5.6k
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Comment: Comment: To remove genotype "./." from vcf file with awk
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 290
0
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1
reply
1.8k
views
Comment: Comment: Software that finds regions matching characteristics such as number of genes in
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 290
4
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3
replies
1.8k
views
Software that finds regions matching characteristics such as number of genes in segment
GWAS WGS Software Statistics
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 290
0
votes
0
replies
1.7k
views
Get output for a list of Tracks & List of regions from UCSC table broswer
Batch Multiple TableBrowser UCSC
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 290
0
votes
0
replies
1.6k
views
Tabix indexing a masterVar file
index tabix CGI masterVar
updated 3.2 years ago by 44k • written 10.5 years ago by ▴ 290
0
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1
reply
4.5k
views
Comment: C: Help needed parsing VCF files
10.5 years ago by vlaufer ▴ 290
1
vote
0
replies
2.1k
views
What tools are there that enable (more sophisticated) analysis of phased VCF files?
NGS phasing vcf
10.6 years ago by vlaufer ▴ 290
0
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0
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9.5k
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Comment: C: Most effective way to merge individual VCF files into VCF files merged by chromo
10.6 years ago by vlaufer ▴ 290
0
votes
0
replies
2.6k
views
Comment: C: Background information and recommendations for phasing ASW whole genomes
10.6 years ago by vlaufer ▴ 290
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