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3
votes
1
reply
3.9k
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Answer: A: bam-readcount reports all reference bases as N
updated 5.3 years ago by 45k • written 10.9 years ago by ▴ 220
0
votes
0
replies
3.2k
views
Answer: A: all the SV type of breakdancer output are ITX is that correct?
updated 5.3 years ago by 45k • written 9.2 years ago by ▴ 220
1
vote
0
replies
4.9k
views
Comment: C: Need help understanding read depth for somaticsniper vcf's
updated 5.8 years ago by 45k • written 9.7 years ago by ▴ 220
2
votes
0
replies
2.1k
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Answer: A: what does "q2" mean in bam-readcount results?
8.1 years ago by ernfrid ▴ 220
0
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0
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1.3k
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Answer: A: any option in somatic sniper to analyze on a region or bed file of regions?
8.5 years ago by ernfrid ▴ 220
0
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0
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2.7k
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Answer: A: bam-readcount fails to report all positions
8.6 years ago by ernfrid ▴ 220
0
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0
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2.5k
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Answer: A: bam- readcount error
8.8 years ago by ernfrid ▴ 220
3
votes
0
replies
3.4k
views
Answer: A: speed of bam-read count is too slow
9.0 years ago by ernfrid ▴ 220
0
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0
replies
5.2k
views
Comment: C: Problem to install Breakdancer on Mac OS X
9.5 years ago by ernfrid ▴ 220
0
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1
reply
3.6k
views
Answer: A: Installing Joinx on Linux-x86_64
9.5 years ago by ernfrid ▴ 220
1
vote
0
replies
2.7k
views
Answer: Answer: Understanding flags from output of bam2cfg.pl - BreakDancer
updated 2.4 years ago by 45k • written 9.7 years ago by ▴ 220
0
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0
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5.2k
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Comment: A: Problem to install Breakdancer on Mac OS X
9.8 years ago by ernfrid ▴ 220
0
votes
1
reply
3.3k
views
Comment: C: Tools to detect SNP supporting read count in each bam file
9.8 years ago by ernfrid ▴ 220
3
votes
1
reply
3.3k
views
Answer: A: Tools to detect SNP supporting read count in each bam file
9.8 years ago by ernfrid ▴ 220
0
votes
1
reply
5.2k
views
Comment: Comment: Problem to install Breakdancer on Mac OS X
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 220
0
votes
1
reply
5.2k
views
Comment: Comment: Problem to install Breakdancer on Mac OS X
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 220
0
votes
1
reply
5.2k
views
Comment: Comment: Problem to install Breakdancer on Mac OS X
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 220
0
votes
1
reply
5.2k
views
Comment: Comment: Problem to install Breakdancer on Mac OS X
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 220
1
vote
1
reply
5.2k
views
Comment: Comment: Problem to install Breakdancer on Mac OS X
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 220
0
votes
1
reply
5.2k
views
Comment: Comment: Problem to install Breakdancer on Mac OS X
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 220
1
vote
1
reply
5.2k
views
Answer: Answer: Problem to install Breakdancer on Mac OS X
updated 2.6 years ago by 45k • written 9.8 years ago by ▴ 220
0
votes
0
replies
2.3k
views
Comment: C: bam-readcount install error
9.9 years ago by ernfrid ▴ 220
0
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0
replies
2.7k
views
Comment: Comment: Error with bam-window
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 220
2
votes
1
reply
3.5k
views
Answer: Answer: Breakdancer: bam2cfg.pl error
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 220
0
votes
1
reply
2.7k
views
Comment: Comment: Error with bam-window
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 220
0
votes
0
replies
3.3k
views
Comment: C: BreakDancer make error
10.0 years ago by ernfrid ▴ 220
1
vote
1
reply
2.7k
views
Answer: A: Error with bam-window
updated 4.0 years ago by 45k • written 10.0 years ago by ▴ 220
0
votes
1
reply
3.3k
views
Comment: C: BreakDancer make error
10.0 years ago by ernfrid ▴ 220
0
votes
1
reply
3.1k
views
Comment: Comment: bam-readcounts: failed to get readcounts for variant allele
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 220
0
votes
1
reply
2.5k
views
Answer: Answer: bam-readcount -p option
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 220
1
vote
1
reply
2.8k
views
Comment: Comment: Breakdancer output error
updated 2.9 years ago by 45k • written 10.1 years ago by ▴ 220
1
vote
2
replies
2.8k
views
Answer: Answer: Breakdancer output error
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 220
0
votes
1
reply
3.2k
views
Comment: Comment: bam-readcounts: despite partial bam file get segfault
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 220
2
votes
1
reply
4.8k
views
Answer: Answer: The importance of LB field in @RG tag for BreakDancer analysis
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 220
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