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Comparing alignments of differing length - what's the right test?
statistics BLAST BLASTp Python COBALT
updated 2.3 years ago by ▴ 110 • written 2.6 years ago by ▴ 60
0
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2
replies
955
views
How do I measure 'circularness' of spots on a 2D grid?
microarray 2D GelAnalyzer Python image
updated 2.3 years ago by ★ 2.1k • written 2.4 years ago by ▴ 60
0
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0
replies
620
views
ImageJ measuring plot areas causes crash: java.lang.ArrayIndexOutOfBoundsException: 200
Fiji ImageJ Java ImageJ2 JavaScript
2.4 years ago by ngarber ▴ 60
0
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10
replies
3.8k
views
My ensembl requests are suddenly very slow - why?
requests biomart Python REST Ensembl
updated 2.5 years ago by ★ 2.4k • written 2.5 years ago by ▴ 60
0
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0
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3.8k
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Comment: Comment: My ensembl requests are suddenly very slow - why?
2.5 years ago by ngarber ▴ 60
0
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1
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3.8k
views
Comment: Comment: My ensembl requests are suddenly very slow - why?
2.5 years ago by ngarber ▴ 60
0
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1
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1.0k
views
Comment: Comment: Ensembl Homology REST requests - possible to download whole database and query l
2.5 years ago by ngarber ▴ 60
0
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1
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3.8k
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Comment: Comment: My ensembl requests are suddenly very slow - why?
2.5 years ago by ngarber ▴ 60
1
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0
replies
2.2k
views
Answer: Answer: Convert Gene Ensemble IDs to Gene Symbols on R
2.5 years ago by ngarber ▴ 60
1
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3
replies
1.0k
views
Ensembl Homology REST requests - possible to download whole database and query locally?
python REST homology biomart ensembl
updated 2.5 years ago by ★ 2.4k • written 2.5 years ago by ▴ 60
3
votes
4
replies
4.8k
views
Access BioMart Homologs from Python?
sequences Python biomaRt homology Ensembl
updated 17 months ago by • 0 • written 2.6 years ago by ▴ 60
0
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2
replies
1.1k
views
pybiomart sqlite3.InterfaceError
pybiomart python biomart
updated 2.5 years ago by ▴ 650 • written 2.5 years ago by ▴ 60
0
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0
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1.1k
views
Answer: Answer: pybiomart sqlite3.InterfaceError
2.5 years ago by ngarber ▴ 60
0
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0
replies
443
views
PyBioMart error only for S. cerevisiae?
pybiomart python biomart
2.5 years ago by ngarber ▴ 60
0
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1
reply
905
views
pybiomart error retrieving sequences
pybiomart python biomart
updated 2.6 years ago by ▴ 650 • written 2.6 years ago by ▴ 60
0
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1
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1.8k
views
Answer: Answer: Bioinformatics analogies
2.6 years ago by ngarber ▴ 60
5
votes
1
reply
699
views
Parallelization of Pairwise2 on Dataframe Rows?
BioPython parallelization BLAST Python pairwise2
updated 2.6 years ago by ▴ 650 • written 2.6 years ago by ▴ 60
1
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0
replies
11k
views
Comment: Comment: Accessing UNIPROT using REST API
2.6 years ago by ngarber ▴ 60
1
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0
replies
1.1k
views
Answer: Answer: Reverse Engineer a PWM from a logo?
2.6 years ago by ngarber ▴ 60
0
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0
replies
929
views
Comment: Comment: BioPython Pairwise2 vs. COBALT - what's the difference?
2.6 years ago by ngarber ▴ 60
2
votes
2
replies
929
views
BioPython Pairwise2 vs. COBALT - what's the difference?
BioPython pairwise2 BLAST Python COBALT
updated 2.6 years ago by 102k • written 2.6 years ago by ▴ 60
1
vote
2
replies
949
views
Using COBALT from within a Python script?
BLAST motif Python homology protein
updated 2.6 years ago by ★ 29k • written 2.6 years ago by ▴ 60
0
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0
replies
1.2k
views
Comment: Comment: What's the full list of UniProt topological domain types?
2.8 years ago by ngarber ▴ 60
3
votes
3
replies
1.2k
views
What's the full list of UniProt topological domain types?
UniProt transmembrane topology Python REST
2.8 years ago by ngarber ▴ 60
0
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1
reply
2.2k
views
Comment: Comment: Only getting 25 results from UniProt REST ID Mapping
2.8 years ago by ngarber ▴ 60
4
votes
3
replies
2.2k
views
Only getting 25 results from UniProt REST ID Mapping
UniProt mapping Python REST Ensembl
updated 2.8 years ago by 11k • written 2.8 years ago by ▴ 60
1
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0
replies
1.8k
views
Comment: Comment: UniProt REST Mapping Problem
2.8 years ago by ngarber ▴ 60
6
votes
5
replies
1.8k
views
UniProt REST Mapping Problem
UniProt mapping Python REST Ensembl
2.8 years ago by ngarber ▴ 60
0
votes
1
reply
1.8k
views
Comment: Comment: UniProt REST Mapping Problem
2.8 years ago by ngarber ▴ 60
0
votes
1
reply
640
views
Check if sequence is cytosol-facing?
Topology Protein Python Motif
updated 2.8 years ago by ★ 29k • written 2.8 years ago by ▴ 60
0
votes
1
reply
727
views
Get cleaved SARS-CoV-2 protein sequences (all major variants)?
motif variant Python SARS-CoV-2 cleavage
updated 2.8 years ago by 150k • written 2.8 years ago by ▴ 60
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