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3
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3
replies
674
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DeNovo Assembly - Assigning gene description
braker2 DeNovo-Assembly masurca WGS
updated 7 months ago by 45k • written 7 months ago by ▴ 70
0
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1
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1.5k
views
Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
CDS Genome NCBI Genbank
updated 15 months ago by 45k • written 16 months ago by ▴ 70
0
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0
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956
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Comment: Comment: GO enrichment of DEGs - DeNovo RNAseq
21 months ago by Sowmya Pulapet ▴ 70
0
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2
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956
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GO enrichment of DEGs - DeNovo RNAseq
DeNovo GO RNA-seq
21 months ago by Sowmya Pulapet ▴ 70
0
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0
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1.9k
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Comment: Comment: Number of genes covered in WES
22 months ago by Sowmya Pulapet ▴ 70
0
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1
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1.9k
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Comment: Comment: Number of genes covered in WES
22 months ago by Sowmya Pulapet ▴ 70
5
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5
replies
1.9k
views
Number of genes covered in WES
targetsequencing WES coverage bedfile
updated 22 months ago by ★ 4.4k • written 22 months ago by ▴ 70
0
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0
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1.5k
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Comment: Comment: Error: free(): invalid next size (fast) and Aborted (core dumped) while using R
23 months ago by Sowmya Pulapet ▴ 70
0
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2
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1.5k
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Error: free(): invalid next size (fast) and Aborted (core dumped) while using R in Linux server
WGBS R MethylKit
23 months ago by Sowmya Pulapet ▴ 70
2
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0
replies
476
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How to to lncRNA analysis from WTS data ?
lncRNA-seq WTS mRNA-seq
24 months ago by Sowmya Pulapet ▴ 70
0
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0
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1.0k
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Comment: Comment: Genome scope for Hybrid assembly
24 months ago by Sowmya Pulapet ▴ 70
2
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2
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1.0k
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Genome scope for Hybrid assembly
Genomescope fastq Hybrid-assembly
updated 24 months ago by 45k • written 24 months ago by ▴ 70
0
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0
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4.7k
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Comment: Comment: Convert Nanopore Fast5 files to Fasta format
2.1 years ago by Sowmya Pulapet ▴ 70
0
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0
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4.7k
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Comment: Comment: Convert Nanopore Fast5 files to Fasta format
2.1 years ago by Sowmya Pulapet ▴ 70
0
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0
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4.7k
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Comment: Comment: Convert Nanopore Fast5 files to Fasta format
2.1 years ago by Sowmya Pulapet ▴ 70
5
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6
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4.7k
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Convert Nanopore Fast5 files to Fasta format
fast5 fasta Nanopore
2.1 years ago by Sowmya Pulapet ▴ 70
0
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0
replies
976
views
ANNOVAR filter based annotation - ClinVar
Annovar clinvar
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 70
0
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0
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1.4k
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Comment: Comment: Combine VCF files
2.3 years ago by Sowmya Pulapet ▴ 70
0
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1
reply
1.4k
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Comment: Comment: Combine VCF files
2.3 years ago by Sowmya Pulapet ▴ 70
0
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4
replies
1.4k
views
Combine VCF files
vcf bcftools
updated 2.3 years ago by 102k • written 2.3 years ago by ▴ 70
0
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1
reply
3.8k
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Comment: Comment: What are Differentially Expressed Genes ?!!
2.3 years ago by Sowmya Pulapet ▴ 70
0
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0
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3.8k
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Comment: Comment: What are Differentially Expressed Genes ?!!
2.3 years ago by Sowmya Pulapet ▴ 70
9
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8
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3.8k
views
7 follow
What are Differentially Expressed Genes ?!!
FDR DEG p-value logFC
updated 2.3 years ago by 89k • written 2.3 years ago by ▴ 70
0
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0
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2.2k
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Comment: Comment: blast engine error empty blast query vector
2.4 years ago by Sowmya Pulapet ▴ 70
0
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4
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2.2k
views
blast engine error empty blast query vector
Blast alignment
updated 2.1 years ago by 45k • written 2.4 years ago by ▴ 70
0
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0
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1.1k
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Comment: Comment: Number of samples for lefse analysis
2.4 years ago by Sowmya Pulapet ▴ 70
0
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2
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1.1k
views
Number of samples for lefse analysis
16s Lefse metagenome.
2.4 years ago by Sowmya Pulapet ▴ 70
2
votes
3
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3.1k
views
blastn error : mdb_env_open: No such file or directory
Makeblastdb sequence_alignment Blastn
updated 2.5 years ago by 151k • written 2.5 years ago by ▴ 70
1
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0
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3.1k
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Answer: Answer: blastn error : mdb_env_open: No such file or directory
2.5 years ago by Sowmya Pulapet ▴ 70
0
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0
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3.1k
views
Comment: Comment: blastn error : mdb_env_open: No such file or directory
updated 2.5 years ago by 151k • written 2.5 years ago by ▴ 70
0
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0
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2.0k
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Comment: Comment: Upregulated and downregulated genes from ChIP-seq data
2.5 years ago by Sowmya Pulapet ▴ 70
0
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0
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2.0k
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Comment: Comment: Upregulated and downregulated genes from ChIP-seq data
2.5 years ago by Sowmya Pulapet ▴ 70
3
votes
6
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2.0k
views
Upregulated and downregulated genes from ChIP-seq data
ChIP-seq RNAseq DEG
2.5 years ago by Sowmya Pulapet ▴ 70
0
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1
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2.0k
views
Comment: Comment: Upregulated and downregulated genes from ChIP-seq data
2.5 years ago by Sowmya Pulapet ▴ 70
0
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0
replies
637
views
Q30 score from MultiQC
qualityscore Q30 FastQC MultiQC
2.6 years ago by Sowmya Pulapet ▴ 70
0
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0
replies
467
views
Local blast with large query and subject file
fasta alignment Blast
2.6 years ago by Sowmya Pulapet ▴ 70
0
votes
0
replies
525
views
KEGG analysis for shotgun sequencing
Functional-annotation Shotgunsequencing KEGG
2.6 years ago by Sowmya Pulapet ▴ 70
1
vote
1
reply
744
views
Functional annotation of VCF files
annotation ontology Functional gene VCF
updated 2.7 years ago by 6.2k • written 2.7 years ago by ▴ 70
1
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7
replies
2.0k
views
Error with txi.salmon in R
RNAseq salmon quantification gff
updated 2.7 years ago by 88k • written 2.7 years ago by ▴ 70
0
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1
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2.0k
views
Comment: Comment: Error with txi.salmon in R
2.7 years ago by Sowmya Pulapet ▴ 70
0
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1
reply
2.0k
views
Comment: Comment: Error with txi.salmon in R
2.7 years ago by Sowmya Pulapet ▴ 70
0
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1
reply
2.0k
views
Comment: Comment: Error with txi.salmon in R
2.7 years ago by Sowmya Pulapet ▴ 70
0
votes
0
replies
520
views
Gene symbol from trinotate annotation report
gene Trinity Trinotate Annotation symbol
2.8 years ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
1.0k
views
Error with Gatk Haplotypecaller
Gatk Haplotypecaller Bam
updated 2.9 years ago by 166k • written 2.9 years ago by ▴ 70
0
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0
replies
4.9k
views
Comment: Comment: How to Create a multi-sample VCF file
2.9 years ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
4.9k
views
Comment: Comment: How to Create a multi-sample VCF file
2.9 years ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
4.9k
views
Comment: Comment: How to Create a multi-sample VCF file
2.9 years ago by Sowmya Pulapet ▴ 70
0
votes
2
replies
4.9k
views
Comment: Comment: How to Create a multi-sample VCF file
2.9 years ago by Sowmya Pulapet ▴ 70
2
votes
9
replies
4.9k
views
How to Create a multi-sample VCF file
VCF multi-sample
2.9 years ago by Sowmya Pulapet ▴ 70
0
votes
0
replies
742
views
Error while using GATK Haplotypecaller
Gatk Haplotypecaller Bam
2.9 years ago by Sowmya Pulapet ▴ 70
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