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3
votes
3
replies
318
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DeNovo Assembly - Assigning gene description
braker2 DeNovo-Assembly masurca WGS
updated 26 days ago by 44k • written 27 days ago by ▴ 70
0
votes
1
reply
856
views
Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
CDS Genome NCBI Genbank
updated 8 months ago by 44k • written 9 months ago by ▴ 70
0
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0
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719
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Comment: Comment: GO enrichment of DEGs - DeNovo RNAseq
15 months ago by Sowmya Pulapet ▴ 70
0
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2
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719
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GO enrichment of DEGs - DeNovo RNAseq
DeNovo GO RNA-seq
15 months ago by Sowmya Pulapet ▴ 70
0
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0
replies
1.3k
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Comment: Comment: Number of genes covered in WES
15 months ago by Sowmya Pulapet ▴ 70
0
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1
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1.3k
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Comment: Comment: Number of genes covered in WES
15 months ago by Sowmya Pulapet ▴ 70
5
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5
replies
1.3k
views
Number of genes covered in WES
targetsequencing WES coverage bedfile
updated 15 months ago by ★ 4.3k • written 15 months ago by ▴ 70
0
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0
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1.1k
views
Comment: Comment: Error: free(): invalid next size (fast) and Aborted (core dumped) while using R
17 months ago by Sowmya Pulapet ▴ 70
0
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2
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1.1k
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Error: free(): invalid next size (fast) and Aborted (core dumped) while using R in Linux server
WGBS R MethylKit
17 months ago by Sowmya Pulapet ▴ 70
2
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0
replies
380
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How to to lncRNA analysis from WTS data ?
lncRNA-seq WTS mRNA-seq
17 months ago by Sowmya Pulapet ▴ 70
0
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0
replies
809
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Comment: Comment: Genome scope for Hybrid assembly
17 months ago by Sowmya Pulapet ▴ 70
2
votes
2
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809
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Genome scope for Hybrid assembly
Genomescope fastq Hybrid-assembly
updated 17 months ago by 44k • written 17 months ago by ▴ 70
0
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0
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3.6k
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Comment: Comment: Convert Nanopore Fast5 files to Fasta format
18 months ago by Sowmya Pulapet ▴ 70
0
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0
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3.6k
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Comment: Comment: Convert Nanopore Fast5 files to Fasta format
18 months ago by Sowmya Pulapet ▴ 70
0
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0
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3.6k
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Comment: Comment: Convert Nanopore Fast5 files to Fasta format
18 months ago by Sowmya Pulapet ▴ 70
5
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6
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3.6k
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Convert Nanopore Fast5 files to Fasta format
fast5 fasta Nanopore
18 months ago by Sowmya Pulapet ▴ 70
0
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0
replies
787
views
ANNOVAR filter based annotation - ClinVar
Annovar clinvar
updated 19 months ago by 44k • written 19 months ago by ▴ 70
0
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0
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1.1k
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Comment: Comment: Combine VCF files
21 months ago by Sowmya Pulapet ▴ 70
0
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1
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1.1k
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Comment: Comment: Combine VCF files
21 months ago by Sowmya Pulapet ▴ 70
0
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4
replies
1.1k
views
Combine VCF files
vcf bcftools
updated 21 months ago by 101k • written 21 months ago by ▴ 70
0
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1
reply
2.3k
views
Comment: Comment: What are Differentially Expressed Genes ?!!
21 months ago by Sowmya Pulapet ▴ 70
0
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0
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2.3k
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Comment: Comment: What are Differentially Expressed Genes ?!!
21 months ago by Sowmya Pulapet ▴ 70
9
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8
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2.3k
views
7 follow
What are Differentially Expressed Genes ?!!
FDR DEG p-value logFC
updated 21 months ago by 88k • written 21 months ago by ▴ 70
0
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0
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1.8k
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Comment: Comment: blast engine error empty blast query vector
22 months ago by Sowmya Pulapet ▴ 70
0
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4
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1.8k
views
blast engine error empty blast query vector
Blast alignment
updated 18 months ago by 44k • written 22 months ago by ▴ 70
0
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0
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828
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Comment: Comment: Number of samples for lefse analysis
22 months ago by Sowmya Pulapet ▴ 70
0
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2
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828
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Number of samples for lefse analysis
16s Lefse metagenome.
22 months ago by Sowmya Pulapet ▴ 70
2
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3
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2.4k
views
blastn error : mdb_env_open: No such file or directory
Makeblastdb sequence_alignment Blastn
updated 23 months ago by 147k • written 23 months ago by ▴ 70
1
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0
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2.4k
views
Answer: Answer: blastn error : mdb_env_open: No such file or directory
23 months ago by Sowmya Pulapet ▴ 70
0
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0
replies
2.4k
views
Comment: Comment: blastn error : mdb_env_open: No such file or directory
updated 23 months ago by 147k • written 23 months ago by ▴ 70
0
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0
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1.4k
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Comment: Comment: Upregulated and downregulated genes from ChIP-seq data
23 months ago by Sowmya Pulapet ▴ 70
0
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0
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1.4k
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Comment: Comment: Upregulated and downregulated genes from ChIP-seq data
23 months ago by Sowmya Pulapet ▴ 70
3
votes
6
replies
1.4k
views
Upregulated and downregulated genes from ChIP-seq data
ChIP-seq RNAseq DEG
23 months ago by Sowmya Pulapet ▴ 70
0
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1
reply
1.4k
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Comment: Comment: Upregulated and downregulated genes from ChIP-seq data
23 months ago by Sowmya Pulapet ▴ 70
0
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0
replies
519
views
Q30 score from MultiQC
qualityscore Q30 FastQC MultiQC
2.0 years ago by Sowmya Pulapet ▴ 70
0
votes
0
replies
378
views
Local blast with large query and subject file
fasta alignment Blast
2.1 years ago by Sowmya Pulapet ▴ 70
0
votes
0
replies
444
views
KEGG analysis for shotgun sequencing
Functional-annotation Shotgunsequencing KEGG
2.1 years ago by Sowmya Pulapet ▴ 70
1
vote
1
reply
564
views
Functional annotation of VCF files
annotation ontology Functional gene VCF
updated 2.1 years ago by 6.2k • written 2.1 years ago by ▴ 70
1
vote
7
replies
1.6k
views
Error with txi.salmon in R
RNAseq salmon quantification gff
updated 2.2 years ago by 85k • written 2.2 years ago by ▴ 70
0
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1
reply
1.6k
views
Comment: Comment: Error with txi.salmon in R
2.2 years ago by Sowmya Pulapet ▴ 70
0
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1
reply
1.6k
views
Comment: Comment: Error with txi.salmon in R
2.2 years ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
1.6k
views
Comment: Comment: Error with txi.salmon in R
2.2 years ago by Sowmya Pulapet ▴ 70
0
votes
0
replies
425
views
Gene symbol from trinotate annotation report
gene Trinity Trinotate Annotation symbol
2.3 years ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
815
views
Error with Gatk Haplotypecaller
Gatk Haplotypecaller Bam
updated 2.3 years ago by 164k • written 2.3 years ago by ▴ 70
0
votes
0
replies
3.8k
views
Comment: Comment: How to Create a multi-sample VCF file
2.3 years ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
3.8k
views
Comment: Comment: How to Create a multi-sample VCF file
2.3 years ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
3.8k
views
Comment: Comment: How to Create a multi-sample VCF file
2.3 years ago by Sowmya Pulapet ▴ 70
0
votes
2
replies
3.8k
views
Comment: Comment: How to Create a multi-sample VCF file
2.3 years ago by Sowmya Pulapet ▴ 70
2
votes
9
replies
3.8k
views
How to Create a multi-sample VCF file
VCF multi-sample
2.3 years ago by Sowmya Pulapet ▴ 70
0
votes
0
replies
629
views
Error while using GATK Haplotypecaller
Gatk Haplotypecaller Bam
2.3 years ago by Sowmya Pulapet ▴ 70
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