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3
votes
19
replies
1.8k
views
extract sequence from genome by region
fasta
updated 11 months ago by 44k • written 11 months ago by ▴ 90
2
votes
3
replies
1.3k
views
Extracting exons using GenomicFeatures is different from manual extraction
R GenomicFeatures
updated 12 months ago by ▴ 140 • written 17 months ago by ▴ 90
1
vote
1
reply
789
views
CHOPCHOP command line
sgRNA chopchop
updated 15 months ago by 147k • written 21 months ago by ▴ 90
0
votes
0
replies
36k
views
Comment: Comment: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
17 months ago by gernophil ▴ 90
0
votes
0
replies
1.4k
views
Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
17 months ago by gernophil ▴ 90
0
votes
1
reply
1.4k
views
Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
17 months ago by gernophil ▴ 90
0
votes
1
reply
1.4k
views
Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
17 months ago by gernophil ▴ 90
0
votes
1
reply
1.4k
views
Comment: Comment: Why did GENCODE change the main annotation file from Comprehensive to Basic
17 months ago by gernophil ▴ 90
1
vote
8
replies
1.4k
views
Why did GENCODE change the main annotation file from Comprehensive to Basic
GENCODE
17 months ago by gernophil ▴ 90
0
votes
0
replies
1.3k
views
Answer: Answer: Extracting exons using GenomicFeatures is different from manual extraction
17 months ago by gernophil ▴ 90
1
vote
0
replies
1.3k
views
Comment: Comment: Extracting exons using GenomicFeatures is different from manual extraction
17 months ago by gernophil ▴ 90
0
votes
0
replies
2.1k
views
Comment: Comment: ERROR using CIBERSORTx Docker version
17 months ago by gernophil ▴ 90
0
votes
0
replies
1.1k
views
Comment: Comment: CIBERSORTx/fractions docker outputs only zeros if --absolute TRUE
17 months ago by gernophil ▴ 90
0
votes
1
reply
1.1k
views
CIBERSORTx/fractions docker outputs only zeros if --absolute TRUE
docker CIBERSORTx
17 months ago by gernophil ▴ 90
0
votes
0
replies
667
views
Comment: Comment: Use DESeq (1) data with DESeq2 Package?
17 months ago by gernophil ▴ 90
1
vote
2
replies
667
views
Use DESeq (1) data with DESeq2 Package?
DESeq DESeq2
17 months ago by gernophil ▴ 90
0
votes
0
replies
61k
views
Answer: Answer: Calculating TPM from featureCounts output
17 months ago by gernophil ▴ 90
0
votes
7
replies
1.7k
views
fasterq-dump outputs "Cannot use '--ngc' as ngc file."
snakemake sra-tools SRA
updated 17 months ago by 44k • written 18 months ago by ▴ 90
0
votes
1
reply
1.7k
views
Comment: Comment: fasterq-dump outputs "Cannot use '--ngc' as ngc file."
18 months ago by gernophil ▴ 90
0
votes
1
reply
1.7k
views
Comment: Comment: fasterq-dump outputs "Cannot use '--ngc' as ngc file."
18 months ago by gernophil ▴ 90
0
votes
1
reply
1.7k
views
Comment: Comment: fasterq-dump outputs "Cannot use '--ngc' as ngc file."
18 months ago by gernophil ▴ 90
0
votes
0
replies
2.2k
views
Comment: Comment: BLAST Database error: No alias or index file found for nucleotide database
20 months ago by gernophil ▴ 90
0
votes
1
reply
2.2k
views
Comment: Comment: BLAST Database error: No alias or index file found for nucleotide database
20 months ago by gernophil ▴ 90
0
votes
1
reply
2.2k
views
Comment: Comment: BLAST Database error: No alias or index file found for nucleotide database
20 months ago by gernophil ▴ 90
0
votes
1
reply
876
views
Comment: Comment: biomaRt crashes R studio
21 months ago by gernophil ▴ 90
1
vote
3
replies
876
views
biomaRt crashes R studio
biomaRt
updated 21 months ago by 5.0k • written 21 months ago by ▴ 90
10
votes
4
replies
1.8k
views
Difference between ENSEMBL releases
release genome ENSEMBL
updated 22 months ago by 27k • written 22 months ago by ▴ 90
0
votes
1
reply
1.8k
views
Comment: Comment: Difference between ENSEMBL releases
22 months ago by gernophil ▴ 90
2
votes
5
replies
1.5k
views
Why multiple SYMBOLS, Consequences... for Variant Effect Predictor (VEP)
VEP
updated 8 months ago by ★ 2.3k • written 23 months ago by ▴ 90
3
votes
3
replies
924
views
Annotate VCF with Pathways (without performing GSEA)
pathway_analysis VCF
24 months ago by gernophil ▴ 90
0
votes
0
replies
924
views
Answer: Answer: Annotate VCF with Pathways (without performing GSEA)
24 months ago by gernophil ▴ 90
0
votes
0
replies
924
views
Comment: Comment: Annotate VCF with Pathways (without performing GSEA)
24 months ago by gernophil ▴ 90
1
vote
1
reply
614
views
Download SraRunTable via entrez-direct
SRA RunTable command line
updated 2.0 years ago by 147k • written 2.0 years ago by ▴ 90
1
vote
3
replies
1.1k
views
bcftools merge doesn't recalculate AF
bcftools
updated 2.2 years ago by 2.9k • written 2.2 years ago by ▴ 90
0
votes
0
replies
558
views
Filtering and sorting of multiallelic sites
VCF multiallelic
2.2 years ago by gernophil ▴ 90
3
votes
1
reply
1.0k
views
Better splitting of mutliallelic sites then bcftools norm --m-any
bcftools
updated 17 months ago by 44k • written 2.2 years ago by ▴ 90
0
votes
0
replies
1.7k
views
Comment: Comment: Can't convert multiple BAMs from SRA to SAMs
2.3 years ago by gernophil ▴ 90
0
votes
1
reply
1.7k
views
Comment: Comment: Can't convert multiple BAMs from SRA to SAMs
2.3 years ago by gernophil ▴ 90
2
votes
6
replies
1.7k
views
Can't convert multiple SAMs from SRA to BAMs
samtools sam-dump SRA
updated 17 months ago by 44k • written 2.3 years ago by ▴ 90
0
votes
1
reply
1.7k
views
Comment: Comment: Can't convert multiple BAMs from SRA to SAMs
2.3 years ago by gernophil ▴ 90
0
votes
1
reply
1.5k
views
Comment: Comment: headers missing in efetch results for SRA database
2.4 years ago by gernophil ▴ 90
0
votes
1
reply
1.5k
views
Comment: Comment: headers missing in efetch results for SRA database
2.4 years ago by gernophil ▴ 90
2
votes
7
replies
1.5k
views
headers missing in efetch results for SRA database
SRA Entrez.Direct efetch
updated 2.4 years ago by ▴ 510 • written 2.4 years ago by ▴ 90
0
votes
1
reply
1.5k
views
Comment: Comment: headers missing in efetch results for SRA database
2.4 years ago by gernophil ▴ 90
94 results • Page 2 of 2
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