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Comment: Comment: First experiences matter
10 months ago by Michael Love ★ 2.6k
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2.6k
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Comment: Comment: First experiences matter
10 months ago by Michael Love ★ 2.6k
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2
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2.6k
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Comment: Comment: First experiences matter
10 months ago by Michael Love ★ 2.6k
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1.3k
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Comment: Comment: Number of accessible regions included by DESeq2 to generate the PCA plot with th
14 months ago by Michael Love ★ 2.6k
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0
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1.4k
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Answer: Answer: Pre-Filtering and Independent Filtering DESeq2
16 months ago by Michael Love ★ 2.6k
2
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1.6k
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Comment: Comment: How reproducible is transcript quantification through salmon?
updated 16 months ago by 85k • written 16 months ago by ★ 2.6k
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2
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2.8k
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Answer: Answer: error with Tximport when txOut = TRUE
16 months ago by Michael Love ★ 2.6k
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2.7k
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Comment: Comment: DESeq2 error while using apeglm - optimHess
18 months ago by Michael Love ★ 2.6k
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0
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958
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Comment: Comment: How does salmon uses polyester?
18 months ago by Michael Love ★ 2.6k
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0
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12k
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Comment: Comment: fold change vs standardized effect size
2.4 years ago by Michael Love ★ 2.6k
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0
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1.9k
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Comment: Comment: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
2.4 years ago by Michael Love ★ 2.6k
1
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1.4k
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Comment: Comment: lfcShrink MA plot comparison
2.7 years ago by Michael Love ★ 2.6k
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3.0k
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Comment: Comment: DESeq2 shrinking log fold-change
2.8 years ago by Michael Love ★ 2.6k
0
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1
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3.0k
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Comment: Comment: DESeq2 shrinking log fold-change
2.8 years ago by Michael Love ★ 2.6k
0
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1
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3.0k
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Answer: Answer: DESeq2 shrinking log fold-change
2.8 years ago by Michael Love ★ 2.6k
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1
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2.0k
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Answer: Answer: DESeq2/Differential expression analysis without replicates
2.8 years ago by Michael Love ★ 2.6k
6
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1
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1.3k
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Answer: Answer: Is there a minimum read count or number of genes for Salmon bias correction?
2.8 years ago by Michael Love ★ 2.6k
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0
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1.0k
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Comment: Comment: fishpond RNA-seq analysis: Two genotype and four treatments
2.8 years ago by Michael Love ★ 2.6k
1
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1
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1.0k
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Answer: Answer: fishpond RNA-seq analysis: Two genotype and four treatments
2.8 years ago by Michael Love ★ 2.6k
2
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0
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1.4k
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Answer: Answer: salmon quantification and then generating BAM files using STAR
2.8 years ago by Michael Love ★ 2.6k
0
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0
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1.3k
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Answer: Answer: Mendelian Randomisation with GTEx data
2.9 years ago by Michael Love ★ 2.6k
4
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0
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1.4k
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Answer: Answer: DEG analysis from Salmon quantification of 3' TagSeq reads with unannotated refe
2.9 years ago by Michael Love ★ 2.6k
2
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0
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2.2k
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Answer: Answer: how to understand the P value of the Deseq2 results
3.6 years ago by Michael Love ★ 2.6k
4
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0
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1.4k
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Comment: C: Gene ID problems when mapping and counting
3.7 years ago by Michael Love ★ 2.6k
1
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0
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2.3k
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Answer: A: DESEq2 error - 'DESeqDataSet' object superclass 'RectangularData' not defined in
3.8 years ago by Michael Love ★ 2.6k
1
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0
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3.2k
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Answer: C: How is the bootstrapping information from kallisto treated in DeSeq2 when import
4.2 years ago by Michael Love ★ 2.6k
2
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1
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4.6k
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Comment: C: DESeq2 analysis with covariates with and without log transformation
4.4 years ago by Michael Love ★ 2.6k
1
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1
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4.6k
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Answer: A: DESeq2 analysis with covariates with and without log transformation
4.4 years ago by Michael Love ★ 2.6k
1
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1
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2.5k
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Comment: C: Transcript level counts from full length scRNA data
4.4 years ago by Michael Love ★ 2.6k
1
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0
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3.1k
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Comment: C: When should one be concerned about the CG content in RNA-seq experiment?
4.6 years ago by Michael Love ★ 2.6k
7
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0
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6.1k
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Answer: A: How to import RSEM results to DESeq2 for differential analysis
updated 4.7 years ago by 85k • written 7.0 years ago by ★ 2.6k
2
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1
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11k
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Answer: C: Is a simple Wilcoxon rank sum test good enough to identify differentially expres
4.8 years ago by Michael Love ★ 2.6k
0
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1
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6.4k
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Comment: C: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 2.6k
2
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1
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6.4k
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Comment: C: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
updated 4.9 years ago by 44k • written 10.5 years ago by ★ 2.6k
0
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1
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9.3k
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Answer: A: To What Degree Could We Determine Whether A Gene Is Expressed?
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 2.6k
1
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0
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5.9k
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Comment: C: R Deseq2 Error: Inv(): Matrix Appears To Be Singular
updated 4.9 years ago by 44k • written 10.6 years ago by ★ 2.6k
1
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1
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7.2k
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Comment: C: DESeq2 multiple factor design clarification
updated 5.1 years ago by 44k • written 9.5 years ago by ★ 2.6k
0
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0
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1.5k
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Comment: C: model design in rna seq - deseq2
5.7 years ago by Michael Love ★ 2.6k
5
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1
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35k
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Comment: C: How is the design in DESeq2 work?
6.0 years ago by Michael Love ★ 2.6k
0
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0
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2.7k
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Comment: C: Pair-wise DESeq Analysis with 3 Factor Levels - RNA-Seq
6.0 years ago by Michael Love ★ 2.6k
3
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2
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4.5k
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Answer: Answer: Is inspection and correction of pvalues still needed in DESeq2?
updated 24 months ago by 44k • written 9.4 years ago by ★ 2.6k
1
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2
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8.4k
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Answer: A: "Duplicate rownames not allowed" when the rownames are not duplicated
6.1 years ago by Michael Love ★ 2.6k
0
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2
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4.7k
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Comment: C: Deseq2 question of a single factor with 3 levels
6.8 years ago by Michael Love ★ 2.6k
1
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0
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3.6k
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Comment: C: Changes log2FC values of DESeq2
6.9 years ago by Michael Love ★ 2.6k
2
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1
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74k
views
Comment: C: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
7.0 years ago by Michael Love ★ 2.6k
0
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0
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2.9k
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Comment: C: Strange distribution of logFC
7.0 years ago by Michael Love ★ 2.6k
0
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0
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3.4k
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Comment: C: Zero read count with deseq2
7.0 years ago by Michael Love ★ 2.6k
0
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0
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2.9k
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Answer: A: what's the meaning of a Concordance at the Top plot(CAT plot)
7.1 years ago by Michael Love ★ 2.6k
7
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1
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29k
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Answer: A: Gene Set Enrichment Analysis after DESeq2
7.1 years ago by Michael Love ★ 2.6k
1
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0
replies
4.4k
views
Comment: C: Changes to dispersion estimates in DESeq2?
7.2 years ago by Michael Love ★ 2.6k
131 results • Page 1 of 3
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