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Interpreting a vcf file
variant vcf
updated 8 hours ago by 166k • written 9 hours ago by ▴ 20
0
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1
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452
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Comment: Comment: Variant calling in tumor/normal pairs is calling heterozygous positions
updated 7 weeks ago by 151k • written 7 weeks ago by ▴ 20
0
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1
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452
views
Comment: Comment: Variant calling in tumor/normal pairs is calling heterozygous positions
7 weeks ago by ramiro.barrantes ▴ 20
0
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5
replies
452
views
Variant calling in tumor/normal pairs is calling heterozygous positions
variant
updated 7 weeks ago by ★ 1.6k • written 8 weeks ago by ▴ 20
0
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0
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370
views
Comment: Comment: Gene level expression versus variant-level expression
8 weeks ago by ramiro.barrantes ▴ 20
0
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2
replies
370
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Gene level expression versus variant-level expression
variant RNASeq
8 weeks ago by ramiro.barrantes ▴ 20
0
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1
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662
views
Comment: Comment: Annotating Illumna epic probes
12 weeks ago by ramiro.barrantes ▴ 20
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0
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662
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Comment: Comment: Annotating Illumna epic probes
12 weeks ago by ramiro.barrantes ▴ 20
2
votes
5
replies
662
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Annotating Illumna epic probes
R illumina EPIC
updated 11 weeks ago by ★ 3.0k • written 12 weeks ago by ▴ 20
3
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2
replies
687
views
biomart hangs
biomaRt
updated 4 months ago by ★ 1.6k • written 4 months ago by ▴ 20
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0
replies
251
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Optimizing mutect/sarek for somatic substitution variant calling
mutect2 tumor-normal sarek variant-calling
updated 6 months ago by 45k • written 6 months ago by ▴ 20
2
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3
replies
762
views
Statistics of methylation experiments
methylation
updated 7 months ago by ▴ 760 • written 7 months ago by ▴ 20
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0
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762
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Comment: Comment: Statistics of methylation experiments
7 months ago by ramiro.barrantes ▴ 20
4
votes
2
replies
593
views
How can I get the list of all human ensembl transcript ids?
Ensembl
updated 7 months ago by ▴ 170 • written 7 months ago by ▴ 20
0
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0
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364
views
Different SNPs found: WGS aligned to WES
WES alignment WGS
8 months ago by ramiro.barrantes ▴ 20
1
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1
reply
428
views
Analysis of Illumina Infinium MethylationEPIC v2.0
MethylationEPIC Infinium
updated 8 months ago by ▴ 50 • written 8 months ago by ▴ 20
0
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0
replies
275
views
parseCSQToGRanges in VariantAnnotation
bioconductor
9 months ago by ramiro.barrantes ▴ 20
1
vote
1
reply
513
views
GATK GRCh38 genome version for biomaRt
biomart
updated 10 months ago by 151k • written 10 months ago by ▴ 20
1
vote
2
replies
880
views
Example human WGS fastq data
WGS
updated 10 months ago by ★ 4.6k • written 10 months ago by ▴ 20
0
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1
reply
522
views
What database to use for GATK baseRecalibration when using the ensembl hg19 genome
ensembl gatk
updated 10 months ago by 151k • written 10 months ago by ▴ 20
1
vote
1
reply
541
views
Calculate allelic frequency from VEP output vcf file
VEP variant
11 months ago by ramiro.barrantes ▴ 20
1
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0
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541
views
Answer: Answer: Calculate allelic frequency from VEP output vcf file
11 months ago by ramiro.barrantes ▴ 20
0
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0
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735
views
Comment: Comment: Finding variants within a subset of a BAM file
11 months ago by ramiro.barrantes ▴ 20
2
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3
replies
735
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Finding variants within a subset of a BAM file
variant calling
11 months ago by ramiro.barrantes ▴ 20
0
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0
replies
358
views
Correct genome version for ncbi37
ensembl biomart
14 months ago by ramiro.barrantes ▴ 20
1
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1
reply
766
views
Correct biomart version for TCGA data
TCGA sarek biomart
updated 15 months ago by ▴ 350 • written 15 months ago by ▴ 20
0
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1
reply
478
views
Determining whether a sample is H1N1 or H3N2
alignment virus amplicon
updated 15 months ago by 151k • written 15 months ago by ▴ 20
0
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1
reply
501
views
Mapping a variant to the uniprot sequence
protein SNPs sequence
updated 2.6 years ago by 151k • written 2.6 years ago by ▴ 20
0
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0
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1.1k
views
Comment: Comment: Where to find an older transcript version?
2.6 years ago by ramiro.barrantes ▴ 20
2
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3
replies
1.1k
views
Where to find an older transcript version?
sequence biomart
2.6 years ago by ramiro.barrantes ▴ 20
0
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0
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1.1k
views
Comment: Comment: Finding unique regions in a sequence
2.6 years ago by ramiro.barrantes ▴ 20
2
votes
3
replies
1.1k
views
Finding unique regions in a sequence
seq peptide sequence blast
2.6 years ago by ramiro.barrantes ▴ 20
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