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Optimizing mutect/sarek for somatic substitution variant calling
mutect2 tumor-normal sarek variant-calling
updated 5 weeks ago by 44k • written 5 weeks ago by • 0
2
votes
3
replies
499
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Statistics of methylation experiments
methylation
updated 10 weeks ago by ▴ 660 • written 10 weeks ago by • 0
0
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0
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499
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Comment: Comment: Statistics of methylation experiments
10 weeks ago by ramiro.barrantes • 0
4
votes
2
replies
359
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How can I get the list of all human ensembl transcript ids?
Ensembl
updated 11 weeks ago by ▴ 170 • written 11 weeks ago by • 0
0
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0
replies
271
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Different SNPs found: WGS aligned to WES
WES alignment WGS
12 weeks ago by ramiro.barrantes • 0
1
vote
1
reply
251
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Analysis of Illumina Infinium MethylationEPIC v2.0
MethylationEPIC Infinium
updated 3 months ago by ▴ 50 • written 3 months ago by • 0
0
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0
replies
182
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parseCSQToGRanges in VariantAnnotation
bioconductor
4 months ago by ramiro.barrantes • 0
1
vote
1
reply
290
views
GATK GRCh38 genome version for biomaRt
biomart
updated 5 months ago by 147k • written 5 months ago by • 0
1
vote
2
replies
490
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Example human WGS fastq data
WGS
updated 5 months ago by ★ 4.5k • written 5 months ago by • 0
0
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1
reply
339
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What database to use for GATK baseRecalibration when using the ensembl hg19 genome
ensembl gatk
updated 5 months ago by 147k • written 5 months ago by • 0
1
vote
1
reply
368
views
Calculate allelic frequency from VEP output vcf file
VEP variant
6 months ago by ramiro.barrantes • 0
1
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0
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368
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Answer: Answer: Calculate allelic frequency from VEP output vcf file
6 months ago by ramiro.barrantes • 0
0
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0
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510
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Comment: Comment: Finding variants within a subset of a BAM file
6 months ago by ramiro.barrantes • 0
2
votes
3
replies
510
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Finding variants within a subset of a BAM file
variant calling
6 months ago by ramiro.barrantes • 0
0
votes
0
replies
270
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Correct genome version for ncbi37
ensembl biomart
8 months ago by ramiro.barrantes • 0
1
vote
1
reply
563
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Correct biomart version for TCGA data
TCGA sarek biomart
updated 9 months ago by ▴ 350 • written 9 months ago by • 0
0
votes
1
reply
368
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Determining whether a sample is H1N1 or H3N2
alignment virus amplicon
updated 10 months ago by 147k • written 10 months ago by • 0
0
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1
reply
420
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Mapping a variant to the uniprot sequence
protein SNPs sequence
updated 2.1 years ago by 147k • written 2.1 years ago by • 0
0
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0
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840
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Comment: Comment: Where to find an older transcript version?
2.1 years ago by ramiro.barrantes • 0
2
votes
3
replies
840
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Where to find an older transcript version?
sequence biomart
2.1 years ago by ramiro.barrantes • 0
0
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0
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886
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Comment: Comment: Finding unique regions in a sequence
2.2 years ago by ramiro.barrantes • 0
2
votes
3
replies
886
views
Finding unique regions in a sequence
seq peptide sequence blast
2.2 years ago by ramiro.barrantes • 0
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