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663
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Add Subscripts to labels in Seurat DimPlot
DimPlot ggplot2 Seurat RStudio
updated 12 months ago by ★ 3.1k • written 12 months ago by ▴ 50
0
votes
1
reply
468
views
Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
MSA substitution VCFstats Evolution VCF
updated 14 months ago by 166k • written 14 months ago by ▴ 50
3
votes
1
reply
1.0k
views
Using DADA2 for finding viral sequence variants
RNASeq Amplicon dada2 Variant
updated 20 months ago by 3.2k • written 20 months ago by ▴ 50
0
votes
0
replies
497
views
Compute Abundance counts for full-length Sequences?
abundance RNASeq Fasta Amplicon
22 months ago by Saran ▴ 50
3
votes
5
replies
2.3k
views
Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
Limma EdgeR Voom RNA-Seq RNA
updated 23 months ago by ★ 8.1k • written 23 months ago by ▴ 50
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0
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2.3k
views
Comment: Comment: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
23 months ago by Saran ▴ 50
1
vote
3
replies
1.3k
views
Count SNP per read
VCF SNP RNA-Seq MSA
updated 24 months ago by 7.6k • written 2.0 years ago by ▴ 50
1
vote
1
reply
697
views
Identifying Mutation Frequency Changes in MSAs over time?
Mutation Fasta MSA MutationRate RNA-Seq
updated 2.1 years ago by 4.7k • written 2.1 years ago by ▴ 50
1
vote
2
replies
1.2k
views
Flitering Genes in RNA-Seq causes more significant FDR Adjusted P-Val DEGs?
Limma RNA Voom EdgeR RNA-Seq
updated 2.1 years ago by 88k • written 2.1 years ago by ▴ 50
0
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0
replies
438
views
Differential Expression Analysis of single cell data with large difference in cell count for groups.
scRNA seurat DEG
2.3 years ago by Saran ▴ 50
3
votes
2
replies
1.0k
views
Cause of short sequences in Amplicon Sequencing?
Illumina ASV Amplicon DADA2
2.3 years ago by Saran ▴ 50
1
vote
1
reply
822
views
Visualize variants and percentage of variants from one sample of Amplicon Seq data?
Amplicon PCR RNAseq GATK BWA
updated 2.4 years ago by ★ 4.2k • written 2.4 years ago by ▴ 50
2
votes
1
reply
761
views
Find ASVs for Non-Microbial Data
Amplicon ASV PCR BWA VCF
updated 2.4 years ago by 3.9k • written 2.4 years ago by ▴ 50
0
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1
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3.0k
views
Comment: Comment: Error in reference fasta file when indexing with samtools
2.4 years ago by Saran ▴ 50
0
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0
replies
475
views
Display fraction of mutations and variants for Amplicon Sequencing sample?
PCR Amplicon VCF BWA
2.4 years ago by Saran ▴ 50
1
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0
replies
3.0k
views
Comment: Comment: Error in reference fasta file when indexing with samtools
2.4 years ago by Saran ▴ 50
0
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1
reply
3.0k
views
Comment: Comment: Error in reference fasta file when indexing with samtools
2.4 years ago by Saran ▴ 50
6
votes
7
replies
3.0k
views
Error in reference fasta file when indexing with samtools
samtools RNA-seq
updated 24 months ago by 45k • written 2.4 years ago by ▴ 50
0
votes
2
replies
978
views
Is the RNA- sequencing quality too bad for analysis?
fastQC RNA PCR BWA minimap2
updated 2.5 years ago by 5.0k • written 2.5 years ago by ▴ 50
0
votes
0
replies
772
views
BWA-MEM : skip orientation FR as there are not enough pairs ?
PCR sequencing BWA illumina
2.5 years ago by Saran ▴ 50
0
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0
replies
1.3k
views
Comment: Comment: Align PCR-amplified sequences to two amplicons to get statistics of alignment?
2.5 years ago by Saran ▴ 50
0
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1
reply
1.3k
views
Comment: Comment: Align PCR-amplified sequences to two amplicons to get statistics of alignment?
2.5 years ago by Saran ▴ 50
1
vote
4
replies
1.3k
views
Align PCR-amplified sequences to two amplicons to get statistics of alignment?
PCR Alignment Amplicon
2.5 years ago by Saran ▴ 50
2
votes
4
replies
1.5k
views
Remove rRNA for RNA-Seq Analysis
rRNA RNA-Seq EdgeR
updated 2.6 years ago by 151k • written 2.6 years ago by ▴ 50
0
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0
replies
1.5k
views
Comment: Comment: Remove rRNA for RNA-Seq Analysis
2.6 years ago by Saran ▴ 50
0
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0
replies
2.4k
views
Comment: Comment: Multimapped reads in STAR alignment and subread::featureCounts()
2.6 years ago by Saran ▴ 50
4
votes
5
replies
2.4k
views
Multimapped reads in STAR alignment and subread::featureCounts()
Multimap STAR featureCounts alignment Rsubread
2.6 years ago by Saran ▴ 50
1
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1
reply
2.4k
views
Answer: Answer: Multimapped reads in STAR alignment and subread::featureCounts()
2.6 years ago by Saran ▴ 50
0
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0
replies
2.4k
views
Comment: Comment: Multimapped reads in STAR alignment and subread::featureCounts()
2.6 years ago by Saran ▴ 50
0
votes
0
replies
2.4k
views
Comment: Comment: Multimapped reads in STAR alignment and subread::featureCounts()
2.6 years ago by Saran ▴ 50
2
votes
1
reply
716
views
Why do all of my PCR reads not map to the reference sequence?
PCR sequencing BWA illumina
updated 2.6 years ago by 151k • written 2.6 years ago by ▴ 50
0
votes
1
reply
998
views
Comment: Comment: What algorithm to use to align sequences of gene to reference gene and analyze v
2.6 years ago by Saran ▴ 50
0
votes
3
replies
998
views
What algorithm to use to align sequences of gene to reference gene and analyze variants?
RNASeq 16S CRISPR Sequencing Fastq
updated 2.6 years ago by 151k • written 2.6 years ago by ▴ 50
1
vote
2
replies
2.2k
views
What do Over-represented Sequences mean in FastQC using RNA-Seq?
fastqc RNAseq trimmomatic adapters
updated 2.7 years ago by 102k • written 2.7 years ago by ▴ 50
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