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1
vote
1
reply
352
views
Add Subscripts to labels in Seurat DimPlot
DimPlot
ggplot2
Seurat
RStudio
updated 5 months ago by
bk11
★ 3.0k • written 5 months ago by
Saran
▴ 50
0
votes
1
reply
322
views
Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
MSA
substitution
VCFstats
Evolution
VCF
updated 7 months ago by
Pierre Lindenbaum
164k • written 7 months ago by
Saran
▴ 50
3
votes
1
reply
609
views
Using DADA2 for finding viral sequence variants
RNASeq
Amplicon
dada2
Variant
updated 13 months ago by
antonioggsousa
3.2k • written 13 months ago by
Saran
▴ 50
0
votes
0
replies
398
views
Compute Abundance counts for full-length Sequences?
abundance
RNASeq
Fasta
Amplicon
15 months ago by
Saran
▴ 50
3
votes
5
replies
1.7k
views
Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
Limma
EdgeR
Voom
RNA-Seq
RNA
updated 17 months ago by
Gordon Smyth
★ 7.6k • written 17 months ago by
Saran
▴ 50
0
votes
0
replies
1.7k
views
Comment:
Comment: Comparing P-Values & FDR adjusted p-values between RNA-Seq experiments?
17 months ago by
Saran
▴ 50
1
vote
3
replies
972
views
Count SNP per read
VCF
SNP
RNA-Seq
MSA
updated 17 months ago by
colindaven
7.0k • written 17 months ago by
Saran
▴ 50
1
vote
1
reply
562
views
Identifying Mutation Frequency Changes in MSAs over time?
Mutation
Fasta
MSA
MutationRate
RNA-Seq
updated 18 months ago by
LauferVA
4.5k • written 18 months ago by
Saran
▴ 50
1
vote
2
replies
981
views
Flitering Genes in RNA-Seq causes more significant FDR Adjusted P-Val DEGs?
Limma
RNA
Voom
EdgeR
RNA-Seq
updated 18 months ago by
ATpoint
85k • written 19 months ago by
Saran
▴ 50
0
votes
0
replies
361
views
Differential Expression Analysis of single cell data with large difference in cell count for groups.
scRNA
seurat
DEG
21 months ago by
Saran
▴ 50
3
votes
2
replies
807
views
Cause of short sequences in Amplicon Sequencing?
Illumina
ASV
Amplicon
DADA2
21 months ago by
Saran
▴ 50
1
vote
1
reply
662
views
Visualize variants and percentage of variants from one sample of Amplicon Seq data?
Amplicon
PCR
RNAseq
GATK
BWA
updated 21 months ago by
cmdcolin
★ 4.0k • written 22 months ago by
Saran
▴ 50
2
votes
1
reply
633
views
Find ASVs for Non-Microbial Data
Amplicon
ASV
PCR
BWA
VCF
updated 22 months ago by
andres.firrincieli
3.8k • written 22 months ago by
Saran
▴ 50
0
votes
1
reply
2.2k
views
Comment:
Comment: Error in reference fasta file when indexing with samtools
22 months ago by
Saran
▴ 50
0
votes
0
replies
358
views
Display fraction of mutations and variants for Amplicon Sequencing sample?
PCR
Amplicon
VCF
BWA
22 months ago by
Saran
▴ 50
1
vote
0
replies
2.2k
views
Comment:
Comment: Error in reference fasta file when indexing with samtools
22 months ago by
Saran
▴ 50
0
votes
1
reply
2.2k
views
Comment:
Comment: Error in reference fasta file when indexing with samtools
22 months ago by
Saran
▴ 50
6
votes
7
replies
2.2k
views
Error in reference fasta file when indexing with samtools
samtools
RNA-seq
updated 17 months ago by
Ram
44k • written 22 months ago by
Saran
▴ 50
0
votes
2
replies
835
views
Is the RNA- sequencing quality too bad for analysis?
fastQC
RNA
PCR
BWA
minimap2
updated 23 months ago by
LChart
4.5k • written 23 months ago by
Saran
▴ 50
0
votes
0
replies
632
views
BWA-MEM : skip orientation FR as there are not enough pairs ?
PCR
sequencing
BWA
illumina
23 months ago by
Saran
▴ 50
0
votes
0
replies
1.0k
views
Comment:
Comment: Align PCR-amplified sequences to two amplicons to get statistics of alignment?
23 months ago by
Saran
▴ 50
0
votes
1
reply
1.0k
views
Comment:
Comment: Align PCR-amplified sequences to two amplicons to get statistics of alignment?
23 months ago by
Saran
▴ 50
1
vote
4
replies
1.0k
views
Align PCR-amplified sequences to two amplicons to get statistics of alignment?
PCR
Alignment
Amplicon
23 months ago by
Saran
▴ 50
2
votes
4
replies
1.2k
views
Remove rRNA for RNA-Seq Analysis
rRNA
RNA-Seq
EdgeR
updated 2.0 years ago by
GenoMax
147k • written 2.0 years ago by
Saran
▴ 50
0
votes
0
replies
1.2k
views
Comment:
Comment: Remove rRNA for RNA-Seq Analysis
2.0 years ago by
Saran
▴ 50
0
votes
0
replies
1.8k
views
Comment:
Comment: Multimapped reads in STAR alignment and subread::featureCounts()
2.0 years ago by
Saran
▴ 50
4
votes
5
replies
1.8k
views
Multimapped reads in STAR alignment and subread::featureCounts()
Multimap
STAR
featureCounts
alignment
Rsubread
2.0 years ago by
Saran
▴ 50
1
vote
1
reply
1.8k
views
Answer:
Answer: Multimapped reads in STAR alignment and subread::featureCounts()
2.1 years ago by
Saran
▴ 50
0
votes
0
replies
1.8k
views
Comment:
Comment: Multimapped reads in STAR alignment and subread::featureCounts()
2.1 years ago by
Saran
▴ 50
0
votes
0
replies
1.8k
views
Comment:
Comment: Multimapped reads in STAR alignment and subread::featureCounts()
2.1 years ago by
Saran
▴ 50
2
votes
1
reply
584
views
Why do all of my PCR reads not map to the reference sequence?
PCR
sequencing
BWA
illumina
updated 2.1 years ago by
GenoMax
147k • written 2.1 years ago by
Saran
▴ 50
0
votes
1
reply
827
views
Comment:
Comment: What algorithm to use to align sequences of gene to reference gene and analyze v
2.1 years ago by
Saran
▴ 50
0
votes
3
replies
827
views
What algorithm to use to align sequences of gene to reference gene and analyze variants?
RNASeq
16S
CRISPR
Sequencing
Fastq
updated 2.1 years ago by
GenoMax
147k • written 2.1 years ago by
Saran
▴ 50
1
vote
2
replies
1.8k
views
What do Over-represented Sequences mean in FastQC using RNA-Seq?
fastqc
RNAseq
trimmomatic
adapters
updated 2.2 years ago by
Istvan Albert
101k • written 2.2 years ago by
Saran
▴ 50
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