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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
9 days ago by Vijith ▴ 90
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
9 days ago by Vijith ▴ 90
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0
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 days ago by Vijith ▴ 90
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1
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 days ago by Vijith ▴ 90
1
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1
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 days ago by Vijith ▴ 90
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3
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 days ago by Vijith ▴ 90
0
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0
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 days ago by Vijith ▴ 90
0
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0
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
12 days ago by Vijith ▴ 90
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1
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
12 days ago by Vijith ▴ 90
0
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1
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
12 days ago by Vijith ▴ 90
1
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0
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
12 days ago by Vijith ▴ 90
0
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1
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2.8k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
13 days ago by Vijith ▴ 90
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33
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2.8k
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Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other…
star RAN-seq bam genome indexing
updated 8 days ago by ★ 2.8k • written 15 days ago by ▴ 90
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
15 days ago by Vijith ▴ 90
0
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1
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2.8k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
15 days ago by Vijith ▴ 90
0
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0
replies
2.8k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
15 days ago by Vijith ▴ 90
0
votes
1
reply
2.8k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
15 days ago by Vijith ▴ 90
0
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0
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152
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Need help with providing RNA Seq data to run braker.pl in ETP mode.
augustus gene-prediction rna-seq braker genemark
4 weeks ago by Vijith ▴ 90
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440
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Comment: Comment: merging of two assemblies from different short-reads techniques
5 weeks ago by Vijith ▴ 90
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1
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440
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Answer: Answer: merging of two assemblies from different short-reads techniques
5 weeks ago by Vijith ▴ 90
6
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4
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637
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Tutorial: Parallel AUGUSTUS Execution via GNU Parallel
augustus genome ngs parallel
updated 6 weeks ago by ★ 4.5k • written 6 weeks ago by ▴ 90
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637
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Comment: Comment: Parallel AUGUSTUS Execution via GNU Parallel
6 weeks ago by Vijith ▴ 90
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0
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318
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Comment: Comment: Need help with AUGUSTUS and AGAT for gene prediction and feature extraction, res
6 weeks ago by Vijith ▴ 90
2
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2
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318
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Need help with AUGUSTUS and AGAT for gene prediction and feature extraction, respectively.
augustus AGAT annotation genome agat
updated 6 weeks ago by 8.9k • written 7 weeks ago by ▴ 90
2
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2
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482
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Started running InterProscan locally. Looks like the process isn't progressing well. Can you look at the report?
genome interproscan annotation
updated 6 weeks ago by 7.0k • written 7 weeks ago by ▴ 90
1
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314
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Comment: Comment: Extraction of miRNA Sequences from Infernal cmscan Output Using Python
3 months ago by Vijith ▴ 90
3
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2
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314
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Extraction of miRNA Sequences from Infernal cmscan Output Using Python
infernal assembly rna genome mirna
updated 3 months ago by ▴ 630 • written 3 months ago by ▴ 90
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186
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miRNA prediction using mirMachine; what are the ways to study the functional significance of miRNAs?
annotation assembly mirmachine mirna
5 months ago by Vijith ▴ 90
0
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1
reply
622
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Comment: Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
6 months ago by Vijith ▴ 90
0
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1
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622
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Comment: Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
6 months ago by Vijith ▴ 90
1
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4
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622
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Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene prediction.
augustus annotation assembly genome
updated 6 months ago by 8.9k • written 6 months ago by ▴ 90
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1
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597
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Comment: Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
6 months ago by Vijith ▴ 90
2
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3
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597
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Help with choosing a model species for Augustus for a de novo assembled genome.
augustus annotation assembly genome
updated 6 months ago by ★ 2.5k • written 6 months ago by ▴ 90
0
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0
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206
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Successfully identified and Masked rpeats using RM. What Next?
sequence annotation repeatmasker illumina assembly
6 months ago by Vijith ▴ 90
0
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1
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1.0k
views
Comment: Comment: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
7 months ago by Vijith ▴ 90
2
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3
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1.0k
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Should I use Dfam or a custom repetitve elements library (from PlantRep) as a repeat database; using RepeatMasker in a Linux machine?
genome sequence repeatmasker blast
updated 7 months ago by ▴ 300 • written 7 months ago by ▴ 90
1
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1
reply
435
views
What could be a better K-mer for my WGS assembly task using ABySS, with my current hardware profile.
ABySS genome k-mer assembly
updated 9 months ago by ★ 1.4k • written 9 months ago by ▴ 90
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1
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1.1k
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Comment: Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
10 months ago by Vijith ▴ 90
3
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7
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1.1k
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"C++ compiler cannot create executables", while installing ABySS 2.0 assembler
assembly illumina abyss btllib paired-end
updated 10 months ago by ★ 1.4k • written 10 months ago by ▴ 90
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0
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1.1k
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Comment: Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
10 months ago by Vijith ▴ 90
0
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0
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1.1k
views
Comment: Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
10 months ago by Vijith ▴ 90
0
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1
reply
1.3k
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Comment: Comment: Seeking help with a hybrid assembly. I have a batch of linked-reads from NovaSeq
13 months ago by Vijith ▴ 90
3
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5
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1.3k
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I have a pair of read files where each is a mixed pool of reads from the Linked-read technology and Illumina short-read technology. Any suggestion on…
NGS clc-genomics illumina WGS
updated 13 months ago by 44k • written 13 months ago by ▴ 90
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2
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1.1k
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Comment: Comment: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
14 months ago by Vijith ▴ 90
2
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3
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1.1k
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I have performed Trimmomatic run for adapter removal. QC report shows drop in the reads and presence of overrepresented sequences. Seeking help!
NGS illumina WGS
updated 13 months ago by 44k • written 14 months ago by ▴ 90
0
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0
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576
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Can someone help me to programmatically implement skewed normal distribution fitting on the given data points?
python probability normal distribution
16 months ago by Vijith ▴ 90
0
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0
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5.3k
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Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
18 months ago by Vijith ▴ 90
0
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1
reply
5.3k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
18 months ago by Vijith ▴ 90
0
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1
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5.3k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
19 months ago by Vijith ▴ 90
0
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0
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5.3k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
19 months ago by Vijith ▴ 90
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