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Comment: Comment: When is it advantageous to use a non-splice aware aligner like BowTie2 over a sp
2.4 years ago by Rob 7.1k
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1.8k
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Comment: Comment: CellRanger v. 2.0 and v. 7.0
2.4 years ago by Rob 7.1k
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1.8k
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Answer: Answer: CellRanger v. 2.0 and v. 7.0
2.4 years ago by Rob 7.1k
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4.4k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
2.4 years ago by Rob 7.1k
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0
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1.4k
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Comment: Comment: High discrepancy between Primary estimate and Bootstraps from Salmon
2.5 years ago by Rob 7.1k
3
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1.4k
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Answer: Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
2.5 years ago by Rob 7.1k
3
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812
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Answer: Answer: Stranded or unstranded? That is the question
2.5 years ago by Rob 7.1k
2
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1.3k
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Answer: Answer: Salmon libtype guessing and mapping bias
2.6 years ago by Rob 7.1k
2
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3.9k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
2.6 years ago by Rob 7.1k
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1.0k
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Answer: Answer: Splice aware or not for RNA sequence data
2.6 years ago by Rob 7.1k
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4.1k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
2.7 years ago by Rob 7.1k
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4.1k
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Comment: Comment: CellRanger runs into error when running fastq files from SRA
2.7 years ago by Rob 7.1k
2
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1.9k
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Comment: Comment: Does RSEM ignore STAR's splice-aware nature?
2.7 years ago by Rob 7.1k
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2.5k
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Comment: Comment: found no concordant and consistent mapping using Salmon
2.7 years ago by Rob 7.1k
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2.5k
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Comment: Comment: found no concordant and consistent mapping using Salmon
2.7 years ago by Rob 7.1k
2
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0
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1.5k
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Answer: Answer: strand specificity
2.7 years ago by Rob 7.1k
1
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1
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4.3k
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Comment: Comment: How to get TPM values from the STAR output?
2.7 years ago by Rob 7.1k
1
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4.3k
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Comment: Comment: How to get TPM values from the STAR output?
2.7 years ago by Rob 7.1k
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1
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2.4k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.7 years ago by Rob 7.1k
1
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1
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2.4k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.7 years ago by Rob 7.1k
1
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1
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2.4k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.7 years ago by Rob 7.1k
2
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0
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2.4k
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Comment: Comment: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.7 years ago by Rob 7.1k
2
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1
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2.4k
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Answer: Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.7 years ago by Rob 7.1k
3
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1
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2.3k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
2.9 years ago by Rob 7.1k
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1
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1.2k
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Answer: Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
2.9 years ago by Rob 7.1k
1
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1
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2.5k
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Comment: Comment: How does Salmon bootstrapping work?
2.9 years ago by Rob 7.1k
4
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2.5k
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Answer: Answer: How does Salmon bootstrapping work?
2.9 years ago by Rob 7.1k
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0
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893
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Answer: Answer: Why is an effective length of a trasncript better than normal length?
3.1 years ago by Rob 7.1k
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0
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1.5k
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Comment: Comment: Is there a minimum read count or number of genes for Salmon bias correction?
3.1 years ago by Rob 7.1k
3
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4.0k
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Answer: Answer: Fastest way to parse through a fasta file in python
3.2 years ago by Rob 7.1k
2
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0
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2.8k
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Comment: Comment: error when indexing transcroptome using salmon
3.3 years ago by Rob 7.1k
1
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1
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2.8k
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Comment: Comment: error when indexing transcroptome using salmon
3.3 years ago by Rob 7.1k
1
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1
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9.8k
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Comment: Comment: Jellyfish -C option explanation
3.3 years ago by Rob 7.1k
4
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2
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1.4k
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Answer: Answer: jellyfish count discrepancy between results obtained with and without -C optio
3.3 years ago by Rob 7.1k
1
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1
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2.4k
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Comment: Comment: Very low read counts for PD1 when using STAR aligner compared to BWA
3.4 years ago by Rob 7.1k
1
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1
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2.4k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
3.4 years ago by Rob 7.1k
4
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1
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6.8k
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Answer: Answer: UMAP vs "rigorous" t-SNE
3.6 years ago by Rob 7.1k
4
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1
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3.2k
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Answer: Answer: k-mer counters - presence/absence matrix
3.7 years ago by Rob 7.1k
2
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0
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8.3k
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Comment: Comment: Tools to generate spliced/unspliced counts
3.8 years ago by Rob 7.1k
0
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2
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2.8k
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Answer: Answer: STARsolo --EmptyDrops_CR parameters
3.8 years ago by Rob 7.1k
2
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1
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3.7k
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Answer: Answer: Star alingment, Salmon quantification
3.9 years ago by Rob 7.1k
3
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0
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1.6k
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Comment: Comment: Getting libType without running quantification with Salmon
3.9 years ago by Rob 7.1k
7
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1
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3.0k
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Answer: Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
4.0 years ago by Rob 7.1k
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1
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2.3k
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Comment: C: Mapping rate troubles
4.1 years ago by Rob 7.1k
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1
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3.6k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
4.2 years ago by Rob 7.1k
1
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1
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3.6k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
4.2 years ago by Rob 7.1k
1
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2
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3.6k
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Comment: C: Salmon BAM target length different to FASTA file sequence length
4.2 years ago by Rob 7.1k
2
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1
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8.0k
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Comment: C: How to change cellranger multimapping algorithm
4.2 years ago by Rob 7.1k
1
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1
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8.0k
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Comment: C: How to change cellranger multimapping algorithm
4.2 years ago by Rob 7.1k
2
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0
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2.5k
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Comment: C: RNA-Seq junction reads overhang imbalance
4.3 years ago by Rob 7.1k
361 results • Page 2 of 8
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