Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
1
reply
7.2k
views
Answer: A: update salmon with conda
4.2 years ago by Rob 6.9k
1
vote
0
replies
10k
views
Comment: C: How does salmon deal with decoy?
4.2 years ago by Rob 6.9k
15
votes
2
replies
10k
views
Comment: C: How does salmon deal with decoy?
4.2 years ago by Rob 6.9k
4
votes
1
reply
2.9k
views
Answer: A: Gibbs sampling/bootstrap replicates in Salmon
4.3 years ago by Rob 6.9k
0
votes
1
reply
1.8k
views
Comment: C: Transcripts with no read support
4.3 years ago by Rob 6.9k
0
votes
2
replies
1.8k
views
Comment: C: Transcripts with no read support
4.3 years ago by Rob 6.9k
2
votes
1
reply
4.0k
views
Answer: A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
4.3 years ago by Rob 6.9k
2
votes
1
reply
1.8k
views
Answer: A: rsem-simulate-reads: simulating different data
4.3 years ago by Rob 6.9k
14
votes
1
reply
10k
views
Answer: A: How does salmon deal with decoy?
4.3 years ago by Rob 6.9k
3
votes
1
reply
1.8k
views
Answer: A: How to get different isoform's counts in different cell by using alevin (salmon
4.4 years ago by Rob 6.9k
0
votes
0
replies
1.7k
views
Comment: C: Salmon or Kallisto without reference transcriptome - possible?
4.4 years ago by Rob 6.9k
2
votes
0
replies
1.1k
views
Answer: A: Trimmomatic and Salmon error
4.4 years ago by Rob 6.9k
1
vote
1
reply
2.2k
views
Comment: C: Salmon building index and quantifying mapping questions
4.5 years ago by Rob 6.9k
0
votes
0
replies
2.2k
views
Comment: C: Salmon building index and quantifying mapping questions
4.5 years ago by Rob 6.9k
1
vote
1
reply
3.5k
views
Comment: C: minimap2: aligning multiple regions to a read in a fastq
4.5 years ago by Rob 6.9k
3
votes
1
reply
2.5k
views
Answer: A: Transcript level counts from full length scRNA data
4.5 years ago by Rob 6.9k
0
votes
1
reply
4.9k
views
Comment: C: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
4.6 years ago by Rob 6.9k
2
votes
1
reply
4.9k
views
Answer: A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
4.6 years ago by Rob 6.9k
3
votes
0
replies
3.9k
views
Answer: A: Question related to time complexity of Needleman-Wunsch Algorithm
4.6 years ago by Rob 6.9k
0
votes
0
replies
1.2k
views
Comment: C: Tool for computing all solutions to the small parsimony problem
4.6 years ago by Rob 6.9k
2
votes
0
replies
2.2k
views
Comment: C: having trouble running Salmon in anaconda prompt
4.7 years ago by Rob 6.9k
0
votes
0
replies
2.2k
views
Comment: C: having trouble running Salmon in anaconda prompt
4.7 years ago by Rob 6.9k
1
vote
1
reply
2.5k
views
Comment: C: hisat2 salmon alignment error
4.7 years ago by Rob 6.9k
1
vote
1
reply
2.5k
views
Answer: A: hisat2 salmon alignment error
4.7 years ago by Rob 6.9k
0
votes
0
replies
1.1k
views
Comment: C: parameters mapping in salmon software
4.8 years ago by Rob 6.9k
0
votes
0
replies
1.1k
views
Comment: C: parameters mapping in salmon software
4.8 years ago by Rob 6.9k
1
vote
2
replies
2.0k
views
Comment: C: can salmon distinguish similar transcript?
4.8 years ago by Rob 6.9k
5
votes
3
replies
2.0k
views
Answer: C: can salmon distinguish similar transcript?
4.8 years ago by Rob 6.9k
5
votes
1
reply
4.3k
views
Answer: A: warning when creating salmon index from GENCODE transcriptome
4.8 years ago by Rob 6.9k
2
votes
1
reply
1.4k
views
Answer: C: Salmon only processes human reads from PDX data
4.9 years ago by Rob 6.9k
2
votes
2
replies
5.1k
views
Comment: C: Sailfish TPM normalization: does it take into account the size the library?
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
1
vote
1
reply
3.0k
views
Comment: C: Can k-tuple(k-mer/k-word) methods apply to reads generated from next-generation
updated 5.0 years ago by 44k • written 10.5 years ago by 6.9k
2
votes
0
replies
6.6k
views
Comment: C: confusion in the DeBruijn Graph
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
1
vote
1
reply
6.6k
views
Comment: C: confusion in the DeBruijn Graph
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
6
votes
2
replies
47k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
3
votes
0
replies
7.4k
views
Answer: A: K-mers using JEllyfish
updated 5.0 years ago by 44k • written 10.5 years ago by 6.9k
2
votes
0
replies
5.7k
views
Comment: C: align shortreads using R
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
1
vote
0
replies
6.6k
views
Comment: C: confusion in the DeBruijn Graph
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
5
votes
1
reply
5.1k
views
Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
1
vote
0
replies
6.6k
views
Comment: C: confusion in the DeBruijn Graph
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
4
votes
4
replies
6.6k
views
Answer: A: confusion in the DeBruijn Graph
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
0
votes
1
reply
7.7k
views
Comment: C: TPM or FPKM as input values for PCA and WGCNA?
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
3
votes
1
reply
4.7k
views
Comment: C: best workflow for RNA data analysis without replications
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
2
votes
0
replies
7.7k
views
Answer: A: TPM or FPKM as input values for PCA and WGCNA?
updated 5.0 years ago by 44k • written 8.9 years ago by 6.9k
0
votes
1
reply
2.7k
views
Answer: A: Why is cuffdiff only returning insignificant differences?
updated 5.0 years ago by 44k • written 10.7 years ago by 6.9k
2
votes
1
reply
2.8k
views
Answer: A: Can pairwise global alignment be done in linear memory with affine gap penalties
updated 5.0 years ago by 44k • written 9.0 years ago by 6.9k
7
votes
2
replies
62k
views
Answer: A: Calculating TPM from featureCounts output
updated 5.0 years ago by 44k • written 9.0 years ago by 6.9k
0
votes
1
reply
1.3k
views
Comment: C: Issue with index creation in RapMap
5.0 years ago by Rob 6.9k
0
votes
0
replies
3.9k
views
Comment: C: Microarray and RNA-seq different result
updated 5.0 years ago by 44k • written 9.1 years ago by 6.9k
0
votes
1
reply
22k
views
Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
updated 5.1 years ago by 44k • written 9.1 years ago by 6.9k
357 results • Page 3 of 8
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6