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Comment: C: finding reads from fastq files corresponds to particular transcript from fasta f
updated 5.1 years ago by 44k • written 9.1 years ago by 6.9k
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Answer: A: what's the best kmer size for sailfish
updated 5.1 years ago by 44k • written 9.1 years ago by 6.9k
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Comment: C: Salmon warning detected suspicious pair
updated 5.1 years ago by 44k • written 9.1 years ago by 6.9k
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1
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4.6k
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Comment: C: Salmon warning detected suspicious pair
updated 5.1 years ago by 44k • written 9.1 years ago by 6.9k
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19k
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Comment: C: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
updated 5.1 years ago by 44k • written 9.2 years ago by 6.9k
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Answer: A: How to handle Reverse complement in De-Bruijn Graph
updated 5.1 years ago by 44k • written 9.2 years ago by 6.9k
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8.6k
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Comment: Comment: Salmon: A fast and versatile new tool for RNA-seq quantification
updated 2.8 years ago by 44k • written 9.2 years ago by 6.9k
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4.3k
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Comment: C: Salmon error message
5.2 years ago by Rob 6.9k
6
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9
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6.2k
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Keeping paired reads together when sorting BAM file by name
alignment next-gen RNA-Seq
updated 2.7 years ago by 44k • written 9.9 years ago by 6.9k
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18k
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Comment: C: Fragment Size: TLEN vs. isize
updated 5.2 years ago by 44k • written 10.5 years ago by 6.9k
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36k
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Answer: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
updated 5.2 years ago by 148k • written 5.2 years ago by 6.9k
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782
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News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 18 months ago by 44k • written 5.3 years ago by 6.9k
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6.1k
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Comment: C: Python Program to read .fasta file to .txt file
5.3 years ago by Rob 6.9k
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3.4k
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Comment: C: Merging the output of salmon for RNA-seq counting with paired-end and single-end
5.3 years ago by Rob 6.9k
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1.3k
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Comment: C: inconsistent results of rsem quantification
5.3 years ago by Rob 6.9k
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Answer: A: Does salmon use phred scores while pseudoaligning (and/or validating mapping)?
5.6 years ago by Rob 6.9k
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2.1k
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Answer: C: do paired end reads both mapped to the same gene appear consecutive to each othe
5.7 years ago by Rob 6.9k
6
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5.5k
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Answer: C: Salmon (quant.sf) to txtimport
5.8 years ago by Rob 6.9k
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1
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6.4k
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Comment: C: Understanding salmon codes
5.8 years ago by Rob 6.9k
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1
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6.4k
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Comment: C: Understanding salmon codes
5.8 years ago by Rob 6.9k
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6.4k
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Comment: C: Understanding salmon codes
5.8 years ago by Rob 6.9k
1
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1
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6.4k
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Comment: C: Understanding salmon codes
5.8 years ago by Rob 6.9k
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6.4k
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Comment: C: Understanding salmon codes
5.8 years ago by Rob 6.9k
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6.4k
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Answer: C: Understanding salmon codes
5.8 years ago by Rob 6.9k
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8.1k
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Comment: C: Salmon transcriptome generation
5.8 years ago by Rob 6.9k
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3
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8.1k
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Answer: A: Salmon transcriptome generation
5.8 years ago by Rob 6.9k
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4.9k
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Comment: C: Salmon Counts differ in Alignment and Quasi-Mapping mode
5.9 years ago by Rob 6.9k
5
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2
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4.9k
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Answer: A: Salmon Counts differ in Alignment and Quasi-Mapping mode
5.9 years ago by Rob 6.9k
2
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1
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7.4k
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Comment: C: How to change cellranger multimapping algorithm
5.9 years ago by Rob 6.9k
3
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3.1k
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Answer: C: RNA-Seq:How to know RNA-seq data is Strand-Specific or not based on only fastq
updated 6.0 years ago by 86k • written 6.0 years ago by 6.9k
5
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2
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7.4k
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Answer: A: How to change cellranger multimapping algorithm
6.0 years ago by Rob 6.9k
4
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2
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2.7k
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Answer: A: Average Insert Size When Using Transcript Quantification Tools Such as Salmon?
6.2 years ago by Rob 6.9k
1
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2
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3.9k
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Comment: C: best pipeline to get gene and transcript counts
6.2 years ago by Rob 6.9k
1
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1
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3.9k
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Comment: C: best pipeline to get gene and transcript counts
6.2 years ago by Rob 6.9k
1
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1
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3.9k
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Comment: C: best pipeline to get gene and transcript counts
6.2 years ago by Rob 6.9k
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2
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3.9k
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Comment: C: best pipeline to get gene and transcript counts
6.2 years ago by Rob 6.9k
0
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1
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3.9k
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Comment: C: best pipeline to get gene and transcript counts
6.2 years ago by Rob 6.9k
1
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1
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4.8k
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Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
6.2 years ago by Rob 6.9k
1
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2
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4.8k
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Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
6.2 years ago by Rob 6.9k
1
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1
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4.8k
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Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
6.2 years ago by Rob 6.9k
1
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1
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4.8k
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Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
6.2 years ago by Rob 6.9k
0
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1
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4.8k
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Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
6.2 years ago by Rob 6.9k
1
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1
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2.8k
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Comment: C: Interpretation of Salmon quat.sf result
6.2 years ago by Rob 6.9k
6
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0
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3.9k
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Answer: A: RNA-seq: differentially expressed genes without genome reference
updated 6.3 years ago by 44k • written 8.8 years ago by 6.9k
0
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1
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5.9k
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Comment: C: Poor correlation of read count values from STAR and Kallisto
updated 6.3 years ago by 44k • written 8.8 years ago by 6.9k
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1
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4.3k
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Comment: C: Maximum size limit for indexing genome with bowtie2 with large index option
6.3 years ago by Rob 6.9k
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1
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4.3k
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Comment: C: Maximum size limit for indexing genome with bowtie2 with large index option
6.3 years ago by Rob 6.9k
4
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1
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1.8k
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Answer: A: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
6.3 years ago by Rob 6.9k
1
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0
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4.7k
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Comment: C: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
6.3 years ago by Rob 6.9k
4
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1
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4.7k
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Answer: A: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
6.3 years ago by Rob 6.9k
357 results • Page 4 of 8
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