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0
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4.6k
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Comment: C: Salmon quantification vs HTSeq count quantification
6.3 years ago by Rob 6.9k
5
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1
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4.6k
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Answer: A: Salmon quantification vs HTSeq count quantification
6.3 years ago by Rob 6.9k
0
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0
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1.5k
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Comment: C: Salmon Algorithm Binary Search
6.3 years ago by Rob 6.9k
3
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1
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1.5k
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Answer: A: Salmon Algorithm Binary Search
6.3 years ago by Rob 6.9k
2
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1
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3.3k
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Comment: C: Stranded RNA-seq data visualization in UCSC
6.4 years ago by Rob 6.9k
3
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1
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3.3k
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Answer: A: Stranded RNA-seq data visualization in UCSC
6.4 years ago by Rob 6.9k
0
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0
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1.7k
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Comment: C: Conflict of abundances on different taxonomic levels using centrifuge
6.4 years ago by Rob 6.9k
2
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1
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1.7k
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Answer: A: Conflict of abundances on different taxonomic levels using centrifuge
6.4 years ago by Rob 6.9k
0
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0
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9.3k
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Comment: C: Mapping vs Quasi-Mapping
6.4 years ago by Rob 6.9k
3
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0
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9.3k
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Comment: C: Mapping vs Quasi-Mapping
6.4 years ago by Rob 6.9k
0
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0
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1.1k
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Answer: A: Bayesian algorithm / HISAT & STAR
6.4 years ago by Rob 6.9k
7
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1
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9.3k
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Comment: C: Mapping vs Quasi-Mapping
6.4 years ago by Rob 6.9k
16
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1
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9.3k
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Answer: C: Mapping vs Quasi-Mapping
6.4 years ago by Rob 6.9k
3
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1
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5.6k
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Answer: A: Big differences between mappings computed by Salmon and quantification
6.4 years ago by Rob 6.9k
0
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1
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1.4k
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Comment: C: Compacted de-bruijn graph
6.5 years ago by Rob 6.9k
5
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1
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12k
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Answer: A: CDS vs cDNA vs transcript for mapping RNA-Seq reads
6.6 years ago by Rob 6.9k
2
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2
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2.5k
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Answer: A: Library type warning in Salmon
6.7 years ago by Rob 6.9k
4
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3
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3.8k
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Answer: A: Number of threads in BWA
6.7 years ago by Rob 6.9k
1
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0
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3.0k
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Comment: C: How to find novel isoforms in RNA-Seq Data
6.8 years ago by Rob 6.9k
0
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0
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2.1k
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Answer: A: Regarding GC correction in sequencing data
7.0 years ago by Rob 6.9k
1
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1
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1.4k
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Answer: A: Hierarchical mapping of RNA-Seq data
7.0 years ago by Rob 6.9k
0
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0
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7.7k
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Comment: C: TPM or FPKM as input values for PCA and WGCNA?
7.1 years ago by Rob 6.9k
1
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1
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4.4k
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Comment: C: Alignment dropped with Salmon
7.1 years ago by Rob 6.9k
1
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2
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4.4k
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Comment: C: Alignment dropped with Salmon
7.1 years ago by Rob 6.9k
1
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1
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6.8k
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Comment: C: Salmon very low mapping
7.1 years ago by Rob 6.9k
0
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2
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6.8k
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Comment: C: Salmon very low mapping
7.1 years ago by Rob 6.9k
0
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1
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6.8k
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Comment: C: Salmon very low mapping
7.1 years ago by Rob 6.9k
1
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0
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4.4k
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Comment: C: Alignment dropped with Salmon
7.1 years ago by Rob 6.9k
4
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0
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4.0k
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Answer: A: From transcripts counts of Salmon to genes counts needed by edgeR
7.1 years ago by Rob 6.9k
0
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0
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3.1k
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Comment: C: How to calculate TPM of transcripts with isoforms
7.2 years ago by Rob 6.9k
2
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1
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3.1k
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Answer: A: How to calculate TPM of transcripts with isoforms
7.2 years ago by Rob 6.9k
3
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0
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20k
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Comment: C: RNA-Seq analysis using STAR and Salmon
7.2 years ago by Rob 6.9k
7
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0
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3.2k
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Answer: A: Convert a FASTA Amino Acid Sequence to RNA (Reverse Central Dogma)
7.3 years ago by Rob 6.9k
0
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0
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1.8k
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Answer: A: Salmon TPMs not the same for each strand individually (--libType IU)?
7.3 years ago by Rob 6.9k
3
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1
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6.0k
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Answer: A: TPM VS FPKM VS TMM and K-mer specific expression quantification
7.4 years ago by Rob 6.9k
0
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0
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4.5k
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Comment: C: Reference for Salmon
7.4 years ago by Rob 6.9k
0
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2
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4.5k
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Comment: C: Reference for Salmon
7.4 years ago by Rob 6.9k
1
vote
0
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12k
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Answer: A: Mapping onto the Transcriptome, RNA-seq
7.4 years ago by Rob 6.9k
3
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0
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1.7k
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Comment: C: salmon kallisto sleuth results in a genome browser ?
7.5 years ago by Rob 6.9k
1
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2
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4.5k
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Answer: A: Reference for Salmon
7.5 years ago by Rob 6.9k
4
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0
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3.8k
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Answer: A: Salmon libType is required but missing, although I thought I supplied it
7.5 years ago by Rob 6.9k
1
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0
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1.3k
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Comment: C: tophat 2 rna seq
7.5 years ago by Rob 6.9k
2
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0
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2.7k
views
Answer: A: Getting this message in SALMON's log file:""Greater than 5% of the fragments dis
7.5 years ago by Rob 6.9k
2
votes
0
replies
2.7k
views
Answer: A: salmon, kallisto psuedoaligners are failing to process
7.6 years ago by Rob 6.9k
1
vote
1
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2.2k
views
Answer: A: combine or split, that's a question for transcriptome assembly
7.6 years ago by Rob 6.9k
11
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0
replies
8.9k
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Answer: A: Effective length in normalisation for reads counts
7.6 years ago by Rob 6.9k
1
vote
1
reply
9.6k
views
Comment: C: Converting TPM to FPKM
7.6 years ago by Rob 6.9k
1
vote
1
reply
3.3k
views
Comment: C: Looking for advice on making a grad school decision on bioinformatics/computatio
7.7 years ago by Rob 6.9k
1
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1
reply
3.3k
views
Answer: A: Looking for advice on making a grad school decision on bioinformatics/computatio
7.7 years ago by Rob 6.9k
1
vote
1
reply
4.1k
views
Comment: C: How is the FM-index built for multiple entries of a fasta file?
7.7 years ago by Rob 6.9k
357 results • Page 5 of 8
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