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22
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5
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8.6k
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Tool: Salmon: A fast and versatile new tool for RNA-seq quantification
RNA-Seq
updated 2.8 years ago by 44k • written 10.0 years ago by 6.9k
3
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1
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10.0k
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Answer: Answer: Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
updated 2.3 years ago by 44k • written 9.3 years ago by 6.9k
0
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0
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9.4k
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Comment: C: Jellyfish -C option explanation
9.4 years ago by Rob 6.9k
0
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1
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9.4k
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Comment: Comment: Jellyfish -C option explanation
updated 2.2 years ago by 44k • written 9.4 years ago by 6.9k
8
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4
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9.4k
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Answer: Answer: Jellyfish -C option explanation
updated 2.2 years ago by 44k • written 9.4 years ago by 6.9k
0
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1
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3.8k
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Comment: Comment: GATB de Bruijn graph
updated 2.2 years ago by 44k • written 9.4 years ago by 6.9k
4
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0
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3.3k
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Answer: Answer: Hash Table Vs Suffix Array Alignment Error Tolerance
updated 2.2 years ago by 44k • written 9.4 years ago by 6.9k
0
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1
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3.8k
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Comment: Comment: GATB de Bruijn graph
updated 2.2 years ago by 44k • written 9.4 years ago by 6.9k
4
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12
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3.8k
views
GATB de Bruijn graph
sequence gatb
updated 2.2 years ago by 44k • written 9.5 years ago by 6.9k
0
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1
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3.8k
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Comment: Comment: GATB de Bruijn graph
updated 2.2 years ago by 44k • written 9.5 years ago by 6.9k
0
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2
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3.8k
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Comment: Comment: GATB de Bruijn graph
updated 2.2 years ago by 44k • written 9.5 years ago by 6.9k
1
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1
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9.6k
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Comment: Comment: Using rna-seq, why map reads to the genome but calculate gene expression by alig
updated 2.0 years ago by 44k • written 9.5 years ago by 6.9k
0
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0
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9.6k
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Comment: Comment: Using rna-seq, why map reads to the genome but calculate gene expression by alig
updated 2.0 years ago by 44k • written 9.5 years ago by 6.9k
1
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0
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38k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
9.5 years ago by Rob 6.9k
1
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1
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38k
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Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 2.0 years ago by 44k • written 9.5 years ago by 6.9k
3
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1
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3.5k
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Answer: Answer: Estimating RPKM or TPM in RNA-Seq data
updated 2.0 years ago by 44k • written 9.5 years ago by 6.9k
1
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2
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38k
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Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 2.0 years ago by 44k • written 9.5 years ago by 6.9k
0
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0
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4.0k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 24 months ago by 44k • written 9.5 years ago by 6.9k
0
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1
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4.0k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 23 months ago by 44k • written 9.5 years ago by 6.9k
0
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1
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4.0k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 23 months ago by 44k • written 9.5 years ago by 6.9k
0
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2
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4.0k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 23 months ago by 44k • written 9.5 years ago by 6.9k
1
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1
reply
38k
views
Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 23 months ago by 44k • written 9.6 years ago by 6.9k
5
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2
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3.7k
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Comparing assembled transcripts against a reference
Assembly RNA-Seq
updated 2.6 years ago by 44k • written 9.8 years ago by 6.9k
0
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0
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2.9k
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Comment: Comment: In search of "good" alternative splicing datasets for benchmarking purposes...
updated 2.7 years ago by 44k • written 9.9 years ago by 6.9k
2
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1
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5.2k
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Answer: Answer: Must paired-end reads be in the same order in the two files for input to Tophat?
updated 2.7 years ago by 44k • written 9.9 years ago by 6.9k
7
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1
reply
13k
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Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 2.7 years ago by 44k • written 9.9 years ago by 6.9k
0
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2
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6.2k
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Comment: Comment: Keeping paired reads together when sorting BAM file by name
updated 2.7 years ago by 44k • written 9.9 years ago by 6.9k
0
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0
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7.1k
views
Comment: Comment: Pandora's Toolbox - a collection of bioinformatics programs
updated 2.7 years ago by 44k • written 10.0 years ago by 6.9k
0
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1
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7.1k
views
Comment: Comment: Pandora's Toolbox - a collection of bioinformatics programs
updated 2.8 years ago by 44k • written 10.0 years ago by 6.9k
1
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1
reply
3.7k
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Comment: Comment: Best HMM library for bioinformatics
updated 2.8 years ago by 44k • written 10.0 years ago by 6.9k
0
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0
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4.3k
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Comment: Comment: Perplexing Bowtie 2 results
updated 2.8 years ago by 44k • written 10.1 years ago by 6.9k
0
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1
reply
4.3k
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Comment: Comment: Perplexing Bowtie 2 results
updated 2.8 years ago by 44k • written 10.1 years ago by 6.9k
0
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1
reply
4.3k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 2.8 years ago by 44k • written 10.1 years ago by 6.9k
0
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3
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4.3k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 2.8 years ago by 44k • written 10.1 years ago by 6.9k
5
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11
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4.3k
views
Perplexing Bowtie 2 results
RNA-Seq
updated 2.8 years ago by 44k • written 10.1 years ago by 6.9k
1
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2
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3.7k
views
Comment: Comment: "Valid" names for paired-end reads
updated 2.9 years ago by 44k • written 10.1 years ago by 6.9k
3
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4
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3.7k
views
"Valid" names for paired-end reads
next-gen-sequencing RNA-Seq
updated 12 months ago by ▴ 140 • written 10.1 years ago by 6.9k
1
vote
9
replies
2.9k
views
"Un-Projecting" genome alignments onto a transcriptome
RNA-Seq alignment genome
updated 5 months ago by ▴ 90 • written 10.2 years ago by 6.9k
0
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0
replies
18k
views
Comment: Comment: Long read alignment
updated 3.7 years ago by 44k • written 10.2 years ago by 6.9k
0
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1
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2.9k
views
Comment: Comment: "Un-Projecting" genome alignments onto a transcriptome
updated 2.9 years ago by 44k • written 10.2 years ago by 6.9k
0
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1
reply
2.9k
views
Comment: Comment: "Un-Projecting" genome alignments onto a transcriptome
updated 2.9 years ago by 44k • written 10.2 years ago by 6.9k
3
votes
1
reply
11k
views
Answer: Answer: How Scores are given in Substitution matrix like PAM and BLOSUM?
updated 2.9 years ago by 44k • written 10.2 years ago by 6.9k
0
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1
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2.9k
views
Comment: Comment: "Un-Projecting" genome alignments onto a transcriptome
updated 2.9 years ago by 44k • written 10.2 years ago by 6.9k
1
vote
0
replies
4.6k
views
Answer: Answer: Confused about gap penalty for global alignment using dynamic programming?
updated 3.0 years ago by 44k • written 10.2 years ago by 6.9k
5
votes
2
replies
5.5k
views
Answer: Answer: Fast kmer reverse complement code using bit tricks
updated 3.0 years ago by 44k • written 10.3 years ago by 6.9k
0
votes
0
replies
2.9k
views
Answer: Answer: Effect of changing scoring functions on Optimal alignment ?
updated 3.0 years ago by 44k • written 10.3 years ago by 6.9k
0
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0
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18k
views
Comment: C: Fragment Size: TLEN vs. isize
10.5 years ago by Rob 6.9k
15
votes
15
replies
18k
views
Fragment Size: TLEN vs. isize
sequencing alignment next-gen
updated 3.1 years ago by 44k • written 10.5 years ago by 6.9k
7
votes
0
replies
3.0k
views
Suffix Array Vs. Compressed Suffix Array Vs. Bwt Search
search alignment
11.0 years ago by Rob 6.9k
0
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0
replies
6.0k
views
Comment: C: Very Large Fpkm Values For Some Transcripts: Artifacts?
11.0 years ago by Rob 6.9k
357 results • Page 7 of 8
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