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8
votes
22
replies
16k
views
Creating reference Index using Bowtie2
genome alignment next-gen Assembly
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 180
0
votes
1
reply
6.2k
views
Answer: C: What are the APIs available to retrieve PubMed or PMC articles?
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 180
2
votes
1
reply
14k
views
Answer: A: how i can install bowtie?
updated 5.7 years ago by 45k • written 10.6 years ago by ▴ 180
1
vote
3
replies
14k
views
bowtie2-align died with signal 11 (SEGV) (core dumped)
bowtie2
updated 6.3 years ago by ▴ 10 • written 8.6 years ago by ▴ 180
0
votes
1
reply
2.3k
views
Comment: C: Removing columns coded by -,N or ? in Alignments
6.7 years ago by cvu ▴ 180
0
votes
1
reply
1.5k
views
Remove Sequences from existing Bowtie2 index
bowtie2 index ngs genome
6.7 years ago by cvu ▴ 180
26
votes
13
replies
33k
views
8 follow
Bowtie2 parameters for best alignment
alignment Assembly genome SNP
updated 2.2 years ago by 9.8k • written 11.0 years ago by ▴ 180
0
votes
0
replies
2.6k
views
Answer: A: run gene enrichment analysis using metatranscriptomic data
7.3 years ago by cvu ▴ 180
0
votes
1
reply
2.2k
views
RAD-seq Downstream analysis
rad-seq ipyrad downstream
updated 7.3 years ago by • 0 • written 8.0 years ago by ▴ 180
0
votes
0
replies
2.0k
views
RRBS: import Bismark output to RnBeads
bismark bsseq sequencing bisulfite methylation
updated 7.4 years ago by 20 • written 7.5 years ago by ▴ 180
0
votes
1
reply
1.5k
views
bsseq fisherTest result
sequencing methylation bsseq bisulfite
7.5 years ago by cvu ▴ 180
0
votes
1
reply
2.3k
views
Comment: C: standalone BLAST parametes
7.8 years ago by cvu ▴ 180
0
votes
1
reply
2.3k
views
Comment: C: standalone BLAST parametes
7.8 years ago by cvu ▴ 180
0
votes
6
replies
2.3k
views
standalone BLAST parametes
genome gene blast
updated 7.8 years ago by ★ 3.7k • written 7.8 years ago by ▴ 180
3
votes
2
replies
2.9k
views
Predict Prion like Proteins (PLAAC)
gene Prion Protein
updated 7.9 years ago by 20 • written 7.9 years ago by ▴ 180
4
votes
1
reply
3.7k
views
Comment: C: which tool is used for separating forward and reverse from paired end fastq
7.9 years ago by cvu ▴ 180
1
vote
1
reply
2.0k
views
Intronic Variant Filtering
variant-calling snp
updated 14 months ago by 45k • written 7.9 years ago by ▴ 180
0
votes
0
replies
2.9k
views
Comment: C: Predict Prion like Proteins (PLAAC)
7.9 years ago by cvu ▴ 180
0
votes
0
replies
3.2k
views
Comment: C: joining paired end illumina data for metagenomic analysis
8.1 years ago by cvu ▴ 180
0
votes
0
replies
3.2k
views
Comment: C: joining paired end illumina data for metagenomic analysis
8.1 years ago by cvu ▴ 180
3
votes
3
replies
3.2k
views
joining paired end illumina data for metagenomic analysis
metagenome 16s QIIME paired end illumina
8.1 years ago by cvu ▴ 180
0
votes
0
replies
3.5k
views
Comment: C: htseq read count zero ?
8.1 years ago by cvu ▴ 180
0
votes
0
replies
3.5k
views
Comment: C: htseq read count zero ?
8.1 years ago by cvu ▴ 180
4
votes
5
replies
3.5k
views
htseq read count zero ?
RNA-Seq htseq trinity
updated 8.1 years ago by 9.0k • written 8.1 years ago by ▴ 180
1
vote
1
reply
1.7k
views
Metagenome Next Generation Sequencing
metagenome metatranscriptome genome sequencing
8.5 years ago by cvu ▴ 180
0
votes
0
replies
3.6k
views
Comment: C: how to map greengene ids to ncbi taxon ids ?
9.3 years ago by cvu ▴ 180
1
vote
2
replies
3.6k
views
how to map greengene ids to ncbi taxon ids ?
NGS sequencing qiime metagenomics genome
updated 2.9 years ago by 45k • written 9.3 years ago by ▴ 180
2
votes
2
replies
3.5k
views
Samtools mpileup refrence fasta file input
alignment SNP Assembly next-gen
updated 9.5 years ago by 20 • written 11.0 years ago by ▴ 180
0
votes
1
reply
4.5k
views
NameError: global name 'xticks' is not defined in graphlan_lib.py while running GraPhlAn
GraPhlAn Python metagenomics taxonomy
updated 2.8 years ago by 45k • written 9.8 years ago by ▴ 180
0
votes
0
replies
2.4k
views
Comment: Comment: Re-naming some sequences header within the fasta file
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 180
0
votes
0
replies
58k
views
Answer: Answer: how to unzip the files in batch?
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 180
0
votes
0
replies
2.3k
views
Comment: Comment: GATK creating hs_err_pid.log file
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 180
5
votes
3
replies
2.3k
views
GATK creating hs_err_pid.log file
SNP next-gen-sequencing
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 180
3
votes
5
replies
4.5k
views
VariantRecalibrator Error message
genome alignment snp Assembly next-gen
updated 3.4 years ago by 45k • written 11.0 years ago by ▴ 180
0
votes
0
replies
4.5k
views
Comment: Comment: VariantRecalibrator Error message
updated 3.4 years ago by 45k • written 10.9 years ago by ▴ 180
16
votes
11
replies
14k
views
Perl script running slow with big files
perl SNP snp alignment Assembly
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 180
0
votes
0
replies
14k
views
Comment: C: Perl script running slow with big files
10.9 years ago by cvu ▴ 180
0
votes
0
replies
14k
views
Comment: C: Perl script running slow with big files
10.9 years ago by cvu ▴ 180
0
votes
0
replies
14k
views
Comment: C: Perl script running slow with big files
updated 10.9 years ago by 55k • written 10.9 years ago by ▴ 180
0
votes
1
reply
4.5k
views
Comment: Comment: VariantRecalibrator Error message
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 180
1
vote
0
replies
3.3k
views
VCF quality filtering
genome alignment SNP Assembly
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 180
1
vote
1
reply
2.6k
views
Which Reference Index to use for Clinical Variants (SNPs and INDELs) Detection ?
Assembly SNP next-gen alignment genome
updated 11.0 years ago by ▴ 290 • written 11.0 years ago by ▴ 180
0
votes
1
reply
5.2k
views
Comment: C: Downloading Snps From 1000Genomes, For A Given Individual.
11.0 years ago by cvu ▴ 180
0
votes
0
replies
3.4k
views
Comment: C: How to find a gene from genome shotgun reads
11.0 years ago by cvu ▴ 180
0
votes
0
replies
16k
views
Comment: Comment: Creating reference Index using Bowtie2
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 180
0
votes
1
reply
3.4k
views
Comment: C: How to find a gene from genome shotgun reads
11.0 years ago by cvu ▴ 180
0
votes
2
replies
16k
views
Comment: Comment: Creating reference Index using Bowtie2
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 180
0
votes
2
replies
16k
views
Comment: C: Creating reference Index using Bowtie2
11.0 years ago by cvu ▴ 180
0
votes
2
replies
16k
views
Comment: Comment: Creating reference Index using Bowtie2
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 180
0
votes
1
reply
16k
views
Comment: C: Creating reference Index using Bowtie2
11.0 years ago by cvu ▴ 180
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