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632
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Comment: Comment: Slingshot python error
2.7 years ago by Whoknows ▴ 960
6
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11
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17k
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Convert HTSeq count table to RPKM value using GFF/GTF
tophat RPKM HTSeq
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 960
1
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2
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2.3k
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Software suggestion for RRBS DMR (methylation) analysis?
methylation RRBS next-gen
updated 4.6 years ago by ▴ 540 • written 7.5 years ago by ▴ 960
2
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0
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48k
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Answer: A: Up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2016)
updated 5.1 years ago by 44k • written 8.6 years ago by ▴ 960
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1
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5.1k
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Answer: A: How to create color range for RPKM/FPKM using R?
updated 5.1 years ago by 44k • written 10.8 years ago by ▴ 960
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1
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21k
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Answer: A: Obtaining the top matches from blast
updated 5.4 years ago by 44k • written 10.7 years ago by ▴ 960
7
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9
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6.3k
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Tophat2 shows error during running
RNA-seq Python Tophat
updated 2.1 years ago by 44k • written 9.8 years ago by ▴ 960
0
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0
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4.0k
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Answer: A: DNA sequence of genes from vcf file
7.5 years ago by Whoknows ▴ 960
1
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1
reply
2.0k
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ROC for biomarker discovery
microarray
updated 7.6 years ago by ▴ 330 • written 7.7 years ago by ▴ 960
4
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1
reply
5.7k
views
How to filter mutect2 VCF output?
gatk mutect2 SNP alignment
updated 7.6 years ago by ★ 3.2k • written 7.6 years ago by ▴ 960
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0
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5.8k
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Answer: A: Download genes from KEGG pathway
7.6 years ago by Whoknows ▴ 960
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0
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2.3k
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Comment: C: Urgent request - Pipeline for finding somatic and germline mutations of a cancer
7.7 years ago by Whoknows ▴ 960
66
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3
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310k
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Understanding up and down regulated genes from LOG2 foldchange or foldchange
protein gene-expression RNA-Seq
updated 23 months ago by 44k • written 10.7 years ago by ▴ 960
3
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2
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2.3k
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Urgent request - Pipeline for finding somatic and germline mutations of a cancer patient
exome next-gen SNP
updated 7.7 years ago by ★ 4.7k • written 7.7 years ago by ▴ 960
0
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0
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2.1k
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Answer: A: How to obtain more GO terms for transcripts
7.7 years ago by Whoknows ▴ 960
0
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0
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7.6k
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Comment: C: GO enrichment analysis with human ENSEMBL ids
7.7 years ago by Whoknows ▴ 960
2
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1
reply
7.6k
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Answer: A: GO enrichment analysis with human ENSEMBL ids
7.7 years ago by Whoknows ▴ 960
1
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1
reply
8.5k
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Answer: A: NCBI vs Ensembl - which one to chose - for downloading protein fasta files
7.7 years ago by Whoknows ▴ 960
3
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1
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2.6k
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Forum: Pipeline suggestions for GO & pathway analysis for species without reference genome
next-gen RNA-Seq de-novo
updated 21 months ago by 44k • written 7.7 years ago by ▴ 960
0
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0
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10.0k
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Answer: A: Best tool to find potential TF binding sites within a specific DNA sequence?
7.7 years ago by Whoknows ▴ 960
0
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1
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3.4k
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Answer: A: Ways to merge GO terms from different analyses?
7.7 years ago by Whoknows ▴ 960
1
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1
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2.0k
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Answer: A: differential expression of miRNA
7.7 years ago by Whoknows ▴ 960
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0
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2.7k
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Comment: C: How to find novel gene/isoform in 1 RNA-SEQ sample?
7.7 years ago by Whoknows ▴ 960
1
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3
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2.7k
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How to find novel gene/isoform in 1 RNA-SEQ sample?
RNA-Seq next-gen
updated 7.7 years ago by 7.6k • written 7.7 years ago by ▴ 960
0
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1
reply
2.8k
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Comment: C: How to deal with RNA-SEQ samples with different number of raw reads?
7.7 years ago by Whoknows ▴ 960
3
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0
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3.2k
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Answer: A: Improve Large Heatmap Generation in R
7.7 years ago by Whoknows ▴ 960
0
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6
replies
2.8k
views
How to deal with RNA-SEQ samples with different number of raw reads?
RNA-Seq alignment
updated 7.7 years ago by 105k • written 7.7 years ago by ▴ 960
0
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1
reply
2.2k
views
blastx strand in output file
strand genome sequence blast
updated 8.2 years ago by ▴ 480 • written 8.2 years ago by ▴ 960
1
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0
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6.1k
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Comment: A: Handbooks for Bioinformatics Ninjas
8.2 years ago by Whoknows ▴ 960
1
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0
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2.6k
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Answer: A: blastx output cut-off for creating gff
8.2 years ago by Whoknows ▴ 960
1
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3
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2.6k
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blastx output cut-off for creating gff
gff blastx ngs
8.2 years ago by Whoknows ▴ 960
0
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0
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4.2k
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Answer: A: Statistical test to compare the number of upregulated genes in a subgroup of gen
8.4 years ago by Whoknows ▴ 960
0
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0
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2.7k
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Comment: C: CLC worcbench assembly
8.4 years ago by Whoknows ▴ 960
0
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0
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4.3k
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Answer: A: Outliers detection methods for RNA-Seq data
8.4 years ago by Whoknows ▴ 960
1
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1
reply
4.3k
views
Comment: C: how to draw COG Histogram ?
8.4 years ago by Whoknows ▴ 960
1
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1
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4.3k
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Answer: A: how to draw COG Histogram ?
8.4 years ago by Whoknows ▴ 960
1
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0
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3.3k
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Answer: A: How to visualize read depth based on genomic location
8.4 years ago by Whoknows ▴ 960
4
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11
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3.3k
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How to visualize read depth based on genomic location
tophat bed bigwig RNA-Seq
8.4 years ago by Whoknows ▴ 960
0
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1
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3.3k
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Comment: C: How to visualize read depth based on genomic location
8.4 years ago by Whoknows ▴ 960
0
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1
reply
3.3k
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Comment: C: How to visualize read depth based on genomic location
8.4 years ago by Whoknows ▴ 960
0
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1
reply
3.3k
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Comment: C: How to visualize read depth based on genomic location
8.4 years ago by Whoknows ▴ 960
0
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1
reply
3.3k
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Comment: C: How to visualize read depth based on genomic location
8.4 years ago by Whoknows ▴ 960
2
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0
replies
17k
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Answer: A: Convert HTSeq count table to RPKM value using GFF/GTF
8.4 years ago by Whoknows ▴ 960
3
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1
reply
5.2k
views
Answer: Answer: Finding orthologous gene within species
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 960
0
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0
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5.2k
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Comment: C: Finding orthologous gene within species
8.5 years ago by Whoknows ▴ 960
0
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1
reply
5.2k
views
Answer: A: Finding orthologous gene within species
8.5 years ago by Whoknows ▴ 960
0
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0
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5.3k
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Comment: C: Unequal paired-end fastq size after quality control
8.5 years ago by Whoknows ▴ 960
0
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0
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1.5k
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Answer: A: RNAseq assembly for diploid genome.
8.5 years ago by Whoknows ▴ 960
0
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0
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5.3k
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Comment: C: Unequal paired-end fastq size after quality control
8.5 years ago by Whoknows ▴ 960
6
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9
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5.3k
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Unequal paired-end fastq size after quality control
RNA-Seq fastq Trimmomatic
updated 8.5 years ago by ★ 2.1k • written 8.5 years ago by ▴ 960
138 results • Page 1 of 3
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