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Comment: Comment: Cytoscape Tetramer Error Without Hints
7 days ago by e.r.zakiev ▴ 250
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1
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905
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Comment: Comment: ChromHMM - annotation of chromatin states
9 weeks ago by e.r.zakiev ▴ 250
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1
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905
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Comment: Comment: ChromHMM - annotation of chromatin states
9 weeks ago by e.r.zakiev ▴ 250
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1
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905
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Comment: Comment: ChromHMM - annotation of chromatin states
9 weeks ago by e.r.zakiev ▴ 250
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5.6k
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Comment: Comment: How do I load a peak file in ChIPseeker?
6 months ago by e.r.zakiev ▴ 250
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1
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5.0k
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Comment: Comment: associate GO ID with GO description
9 months ago by e.r.zakiev ▴ 250
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1
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578
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Answer: Answer: Problem in RNASeq data analysis
9 months ago by e.r.zakiev ▴ 250
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1
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2.9k
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Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
10 months ago by e.r.zakiev ▴ 250
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2.3k
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Comment: Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
11 months ago by e.r.zakiev ▴ 250
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1.4k
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
11 months ago by e.r.zakiev ▴ 250
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7
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1.4k
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Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity scVelo scRNA-seq splicing
11 months ago by e.r.zakiev ▴ 250
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1
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1.4k
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Answer: Answer: Very low RNA splicing rate for pulmonary AT2 cells
11 months ago by e.r.zakiev ▴ 250
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0
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1.8k
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Comment: Comment: Classifying repeat features from Ensembl
11 months ago by e.r.zakiev ▴ 250
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0
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8.9k
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Comment: Comment: Repeat masked gtf files from ensembl
11 months ago by e.r.zakiev ▴ 250
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1
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8.9k
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Comment: Comment: Repeat masked gtf files from ensembl
11 months ago by e.r.zakiev ▴ 250
0
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1
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8.9k
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Comment: Comment: Repeat masked gtf files from ensembl
12 months ago by e.r.zakiev ▴ 250
0
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1
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1.8k
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Comment: Comment: Classifying repeat features from Ensembl
12 months ago by e.r.zakiev ▴ 250
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0
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8.9k
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Comment: Comment: Repeat masked gtf files from ensembl
12 months ago by e.r.zakiev ▴ 250
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0
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1.4k
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
12 months ago by e.r.zakiev ▴ 250
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1
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1.4k
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 12 months ago by 45k • written 12 months ago by ▴ 250
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0
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1.1k
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
12 months ago by e.r.zakiev ▴ 250
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0
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2.0k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
12 months ago by e.r.zakiev ▴ 250
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0
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2.0k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
12 months ago by e.r.zakiev ▴ 250
1
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2
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1.1k
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Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
SoupX scRNA-seq
12 months ago by e.r.zakiev ▴ 250
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0
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3.2k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
14 months ago by e.r.zakiev ▴ 250
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1
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3.2k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
14 months ago by e.r.zakiev ▴ 250
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0
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3.2k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
14 months ago by e.r.zakiev ▴ 250
2
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1
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870
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Data scaling in single-cell RNAseq - sample-wise or on the full set?
scRNA-seq seurat
updated 14 months ago by ★ 3.0k • written 14 months ago by ▴ 250
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1
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3.2k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
14 months ago by e.r.zakiev ▴ 250
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0
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6.1k
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Comment: Comment: How long it takes to run repeat masker on a full genome
14 months ago by e.r.zakiev ▴ 250
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1
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6.1k
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Comment: Comment: How long it takes to run repeat masker on a full genome
14 months ago by e.r.zakiev ▴ 250
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0
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1.3k
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
14 months ago by e.r.zakiev ▴ 250
0
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0
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12k
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Comment: Comment: best way to visualize bam file
14 months ago by e.r.zakiev ▴ 250
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0
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1.2k
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Comment: Comment: from fasta to gtf format?
14 months ago by e.r.zakiev ▴ 250
0
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1
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24k
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Comment: Comment: how do I run repeat masker
14 months ago by e.r.zakiev ▴ 250
0
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1
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8.9k
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Comment: Comment: Repeat masked gtf files from ensembl
14 months ago by e.r.zakiev ▴ 250
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0
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2.4k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
14 months ago by e.r.zakiev ▴ 250
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0
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1.7k
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
16 months ago by e.r.zakiev ▴ 250
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0
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397
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cNMF vs LIGER
NMF correction batch
16 months ago by e.r.zakiev ▴ 250
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0
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2.8k
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
16 months ago by e.r.zakiev ▴ 250
0
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0
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543
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P-value for comparing GSVA scores
GSVA
updated 17 months ago by 45k • written 17 months ago by ▴ 250
0
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0
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896
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
17 months ago by e.r.zakiev ▴ 250
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0
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4.9k
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Comment: Comment: Clustering in single cell
17 months ago by e.r.zakiev ▴ 250
1
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2
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896
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Which embedding for clustering of cells in single-cell RNAseq?
tSNE ICA clustering PCA UMAP
17 months ago by e.r.zakiev ▴ 250
2
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0
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2.1k
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Answer: Answer: Cluster annotation in single cell
17 months ago by e.r.zakiev ▴ 250
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0
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4.9k
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Comment: Comment: Clustering in single cell
17 months ago by e.r.zakiev ▴ 250
1
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0
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4.9k
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Comment: Comment: Clustering in single cell
17 months ago by e.r.zakiev ▴ 250
0
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1
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4.9k
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Comment: Comment: Clustering in single cell
17 months ago by e.r.zakiev ▴ 250
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0
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2.8k
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Comment: Comment: Clustering resolution single-cell RNA-seq
17 months ago by e.r.zakiev ▴ 250
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0
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4.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
18 months ago by e.r.zakiev ▴ 250
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