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Issue with Taxonomy Assignment Using Kraken and Custom Database (BOLD, Nemabiome) in QIIME2 shotgun
BOLD Qiime2 Taxonomy Assignment Kraken2
9 days ago by ohtang7 ▴ 40
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177
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For RNAseq GSA analysis with unique rodent species
GOenrichment RNAseq GSA hypergeometrictest Apodemus
9 weeks ago by ohtang7 ▴ 40
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2
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594
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Comment: Comment: Has anyone tried absence or presence heatmap ? (Or suggestion)
10 weeks ago by ohtang7 ▴ 40
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4
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594
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Has anyone tried absence or presence heatmap ? (Or suggestion)
R absence Heatmap grouping
updated 10 weeks ago by ▴ 130 • written 11 weeks ago by ▴ 40
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594
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Comment: Comment: Has anyone tried absence or presence heatmap ? (Or suggestion)
11 weeks ago by ohtang7 ▴ 40
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663
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Comment: Comment: STAR alignment for RNA seq - trouble occurred
11 weeks ago by ohtang7 ▴ 40
7
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5
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663
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STAR alignment for RNA seq - trouble occurred
Alignment STAR RNA-seq gtf
11 weeks ago by ohtang7 ▴ 40
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663
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Comment: Comment: STAR alignment for RNA seq - trouble occurred
updated 11 weeks ago by 149k • written 11 weeks ago by ▴ 40
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1
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872
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Comment: Comment: Is there any way to modify this pie chart ?
updated 9 months ago by 149k • written 9 months ago by ▴ 40
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3
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872
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Is there any way to modify this pie chart ?
pie ggplot R chart
updated 9 months ago by 149k • written 9 months ago by ▴ 40
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259
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The concept of co-occurrence network structure
co-occurence microbiome network
9 months ago by ohtang7 ▴ 40
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1
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543
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Network Analysis of Microbiome Data: MicrobiomeAnalyst vs. Cytoscape
MicrobiomeAnalyst
12 months ago by ohtang7 ▴ 40
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884
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Comment: Comment: How Can I move the scattered dots more closer into the center of box ?
14 months ago by ohtang7 ▴ 40
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4
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884
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How Can I move the scattered dots more closer into the center of box ?
R Boxplots geom_jitter
14 months ago by ohtang7 ▴ 40
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3
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1.1k
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How can I adjust Y-axis scale when making relative abundance box plot ?
statistics box-plot R scale_adjustment logarithm
updated 14 months ago by ▴ 930 • written 14 months ago by ▴ 40
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1.0k
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Comment: Comment: Making multiple box plots with relative abundance in R
14 months ago by ohtang7 ▴ 40
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1.0k
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Comment: Comment: Making multiple box plots with relative abundance in R
14 months ago by ohtang7 ▴ 40
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4
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1.0k
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Making multiple box plots with relative abundance in R
R Boxplots
14 months ago by ohtang7 ▴ 40
0
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1
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614
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chi-square test using vectors - and trying to for loop
R chi-square
updated 16 months ago by 44k • written 16 months ago by ▴ 40
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460
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How can I obtain the significantly different taxa data from this Aldex plot ? (Using R)
taxa test Aldex2 of abundance Relative R
23 months ago by ohtang7 ▴ 40
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584
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How to export the result contents (analyzed part only) of clr function to the CSV file ? (The microbiota data) in R Aldex2 package
Aldex2 ASV R
updated 23 months ago by 44k • written 23 months ago by ▴ 40
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1.1k
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Comment: Comment: What's the reason and how to fix - Regression model summary - variable name is c
23 months ago by ohtang7 ▴ 40
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2
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1.1k
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What's the reason and how to fix - Regression model summary - variable name is combined with a category character in R
interpretation Model GLM Regression Summary LM
23 months ago by ohtang7 ▴ 40
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3
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2.0k
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How can I change my default python version (from upper to lower) in Ubuntu OS using virtual machine ?
Qiime2 Linux Machine Virtual Python
updated 2.2 years ago by 149k • written 2.3 years ago by ▴ 40
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0
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2.0k
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Answer: Answer: How can I change my default python version (from upper to lower) in Ubuntu OS us
2.2 years ago by ohtang7 ▴ 40
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3.0k
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Comment: Comment: Using Generalized Linear Model in Microbial structure comparison
2.2 years ago by ohtang7 ▴ 40
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0
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2.0k
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Comment: Comment: How can I change my default python version (from upper to lower) in Ubuntu OS us
updated 2.3 years ago by 55k • written 2.3 years ago by ▴ 40
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3.0k
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Comment: Comment: Using Generalized Linear Model in Microbial structure comparison
2.3 years ago by ohtang7 ▴ 40
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6
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3.0k
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Using Generalized Linear Model in Microbial structure comparison
metabarcoding GLM microbiota GLMM
2.2 years ago by ohtang7 ▴ 40
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