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596
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annotation before integration
integration annotation
updated 12 months ago by ★ 4.5k • written 12 months ago by ▴ 120
0
votes
0
replies
752
views
scanpy problem for empty cells
scanpy
updated 15 months ago by 44k • written 15 months ago by ▴ 120
1
vote
1
reply
1.9k
views
scanpy add metadata
scanpy metadata
updated 15 months ago by ▴ 120 • written 17 months ago by ▴ 120
1
vote
3
replies
7.0k
views
using scanpy to merge objects
scanpy scRNA-seq single-cell
updated 15 months ago by ▴ 120 • written 18 months ago by ▴ 120
0
votes
0
replies
328
views
Question about relative contribution calculation
relative-contribution
updated 15 months ago by 44k • written 15 months ago by ▴ 120
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0
replies
1.3k
views
Comment: Comment: Can I using scVI to integrate data, then using R to conduct following analysis?
16 months ago by Andy ▴ 120
2
votes
3
replies
1.3k
views
Can I using scVI to integrate data, then using R to conduct following analysis?
R python single-cell
16 months ago by Andy ▴ 120
0
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0
replies
539
views
Questions Arising from Using Scanpy for Data Input and scVI for Batch Effect Removal
single scanpy cell scvi
16 months ago by Andy ▴ 120
0
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0
replies
461
views
How to decide number of features
object number features Seurat of
16 months ago by Andy ▴ 120
0
votes
0
replies
4.2k
views
Comment: Comment: subset data problem
16 months ago by Andy ▴ 120
0
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0
replies
4.2k
views
Comment: Comment: subset data problem
17 months ago by Andy ▴ 120
0
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0
replies
4.2k
views
Comment: Comment: subset data problem
updated 17 months ago by 148k • written 17 months ago by ▴ 120
1
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8
replies
4.2k
views
subset data problem
R seurat
16 months ago by Andy ▴ 120
0
votes
1
reply
1.5k
views
Seurat object problem
Seurat
updated 17 months ago by 86k • written 17 months ago by ▴ 120
2
votes
3
replies
1.0k
views
Integration more than one million cell
scRNA-seq single-cell
updated 12 months ago by 88k • written 17 months ago by ▴ 120
8
votes
7
replies
1.6k
views
new visualization method for dimension reduction technique
dimension-reduction
updated 17 months ago by ★ 28k • written 17 months ago by ▴ 120
0
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1
reply
1.6k
views
Comment: Comment: new visualization method for dimension reduction technique
17 months ago by Andy ▴ 120
0
votes
0
replies
1.6k
views
Comment: Comment: new visualization method for dimension reduction technique
17 months ago by Andy ▴ 120
0
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0
replies
1.6k
views
Comment: Comment: new visualization method for dimension reduction technique
17 months ago by Andy ▴ 120
1
vote
1
reply
845
views
Comment: Comment: snakemake and snakefile question.
17 months ago by Andy ▴ 120
2
votes
2
replies
845
views
snakemake and snakefile question.
snakemake
updated 17 months ago by 44k • written 17 months ago by ▴ 120
0
votes
0
replies
1.9k
views
Comment: Comment: vector::reserve error message
17 months ago by Andy ▴ 120
0
votes
1
reply
1.9k
views
Comment: Comment: vector::reserve error message
17 months ago by Andy ▴ 120
0
votes
0
replies
600
views
Comment: Comment: scIB pipeline error
17 months ago by Andy ▴ 120
0
votes
2
replies
1.9k
views
vector::reserve error message (Problem solved)
R
updated 17 months ago by 44k • written 17 months ago by ▴ 120
0
votes
2
replies
600
views
scIB pipeline error
pipeline scib
17 months ago by Andy ▴ 120
0
votes
0
replies
426
views
Comment: Comment: conos error
17 months ago by Andy ▴ 120
0
votes
1
reply
426
views
conos error
conos batch-effect
17 months ago by Andy ▴ 120
0
votes
1
reply
749
views
change gene id to gene name
gene id name
updated 17 months ago by ★ 4.5k • written 17 months ago by ▴ 120
0
votes
0
replies
3.8k
views
Comment: Comment: In Scanpy, how to RDS file and merge it with other Scanpy objects.
17 months ago by Andy ▴ 120
7
votes
2
replies
3.8k
views
In Scanpy, how to RDS file and merge it with other Scanpy objects.
scanpy file RDS
17 months ago by Andy ▴ 120
0
votes
0
replies
457
views
fastMNN problem
fastMNN
updated 17 months ago by 86k • written 17 months ago by ▴ 120
0
votes
0
replies
1.3k
views
Comment: Comment: Merge more than 150 Seurat objects together for further analysis
17 months ago by Andy ▴ 120
0
votes
2
replies
1.3k
views
Merge more than 150 Seurat objects together for further analysis
seurat objects merge
17 months ago by Andy ▴ 120
0
votes
0
replies
741
views
Comment: Comment: Batch correction score and bio conservation score how to get those?
18 months ago by Andy ▴ 120
2
votes
2
replies
741
views
Batch correction score and bio conservation score how to get those?
Batch-correction bio-conservation
updated 18 months ago by 44k • written 18 months ago by ▴ 120
0
votes
0
replies
3.7k
views
Comment: Comment: Merge really large amount of Seurat objects
18 months ago by Andy ▴ 120
2
votes
3
replies
3.7k
views
Merge really large amount of Seurat objects
Seurat
18 months ago by Andy ▴ 120
0
votes
1
reply
3.7k
views
Comment: Comment: Merge really large amount of Seurat objects
updated 18 months ago by 148k • written 18 months ago by ▴ 120
0
votes
1
reply
602
views
install SCP problem
SCP
updated 18 months ago by 86k • written 18 months ago by ▴ 120
0
votes
0
replies
7.0k
views
Comment: Comment: using scanpy to merge objects
18 months ago by Andy ▴ 120
0
votes
1
reply
7.0k
views
Comment: Comment: using scanpy to merge objects
18 months ago by Andy ▴ 120
1
vote
1
reply
723
views
How to extract one Seurat object from an RDS file.
seurat object
updated 18 months ago by ★ 18k • written 18 months ago by ▴ 120
1
vote
3
replies
895
views
What is the best integration package for large single cell RNA sequencing dataset.
scRNA-seq integration
updated 9 months ago by 13k • written 18 months ago by ▴ 120
0
votes
0
replies
614
views
Comment: Comment: Integrate RDS files
18 months ago by Andy ▴ 120
0
votes
0
replies
838
views
Comment: Comment: fastq.gz how to split.
18 months ago by Andy ▴ 120
2
votes
2
replies
838
views
fastq.gz how to split.
fastq.gz split
18 months ago by Andy ▴ 120
0
votes
0
replies
760
views
Comment: Comment: How to deal with SRA file without .SRA
18 months ago by Andy ▴ 120
0
votes
2
replies
760
views
How to deal with SRA file without .SRA
SRA
18 months ago by Andy ▴ 120
0
votes
1
reply
614
views
Integrate RDS files
integration
18 months ago by Andy ▴ 120
112 results • Page 1 of 3
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