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Comment: Comment: Jointly analyzing DEGs - my RNA-seq and GTEx - How to do it properly?
16 months ago by achamess ▴ 90
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3
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Jointly analyzing DEGs - my RNA-seq and GTEx - How to do it properly?
rnaseq gtex
16 months ago by achamess ▴ 90
6
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7
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8.6k
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7 follow
How to find CpG island shore?
methylation
updated 2.1 years ago by ★ 1.1k • written 10.6 years ago by ▴ 90
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0
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3.4k
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Comment: Comment: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
2.1 years ago by achamess ▴ 90
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0
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3.4k
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Comment: Comment: Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to G
2.1 years ago by achamess ▴ 90
4
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5
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3.4k
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Single Cell Gene Count Matrix with Ensembl IDs as Rownames. Need to convert to Gene Names.
ensembl single_cell genomics
updated 2.1 years ago by 13k • written 2.1 years ago by ▴ 90
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1
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4.2k
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Comment: C: Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
5.3 years ago by achamess ▴ 90
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3
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4.2k
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Single-nucleus RNA-seq processing (10x) with Pseudoaligners (Kallisto)
scRNA-seq RNA-seq Kallisto
updated 5.3 years ago by ▴ 700 • written 5.3 years ago by ▴ 90
5
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2
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16k
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Using the row order of one pheatmap to set the order of another. How to do it?
RNA-Seq pheatmap R
updated 5.5 years ago by 44k • written 8.2 years ago by ▴ 90
0
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0
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6.4k
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Answer: A: How To Plot Rarefaction/Saturation Curve Based On Bam File Generated By Tophat?
6.4 years ago by achamess ▴ 90
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5.4k
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Comment: C: RNA seq saturation analysis
6.4 years ago by achamess ▴ 90
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4
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1.9k
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Pseudoreplication and comparing RNA-seq samples from the same animal
RNA-Seq
6.9 years ago by achamess ▴ 90
0
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2
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1.9k
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Answer: A: Pseudoreplication and comparing RNA-seq samples from the same animal
6.9 years ago by achamess ▴ 90
3
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1
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4.1k
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Answer: A: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.7 years ago by achamess ▴ 90
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4.1k
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Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.7 years ago by achamess ▴ 90
6
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9
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4.1k
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Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
sequencing RNA-Seq
7.7 years ago by achamess ▴ 90
0
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1
reply
4.1k
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Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.7 years ago by achamess ▴ 90
0
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1
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4.1k
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Comment: C: Tool to append Illumina Read 1 to Read 2 for downstream demultiplexing
7.7 years ago by achamess ▴ 90
0
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0
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1.4k
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Interpretation of Gene Body Distribution from nuclear RNA-Seq
RNA-Seq
7.9 years ago by achamess ▴ 90
0
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0
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3.4k
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Comment: C: RSeQC GeneBody function error. Stops at R Script Step
7.9 years ago by achamess ▴ 90
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0
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3.4k
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Comment: C: RSeQC GeneBody function error. Stops at R Script Step
7.9 years ago by achamess ▴ 90
4
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3
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3.4k
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RSeQC GeneBody function error. Stops at R Script Step
RNA-Seq software error
updated 7.9 years ago by ▴ 200 • written 7.9 years ago by ▴ 90
0
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1
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3.4k
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Comment: C: Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
7.9 years ago by achamess ▴ 90
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1
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3.4k
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Comment: C: Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
7.9 years ago by achamess ▴ 90
1
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5
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3.4k
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Ensembl GTF for Mouse that includes intron, exons, utrs, etc.
RNA-Seq
7.9 years ago by achamess ▴ 90
0
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0
replies
22k
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Comment: C: Where To Download Genome Annotation Including Exon, Intron, Utr, Intergenic Info
7.9 years ago by achamess ▴ 90
1
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4
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5.2k
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Code for iteratively executing an alignment package (Kallisto) on multiple files in a directory and uniquely creating an output file
RNA-Seq
updated 8.3 years ago by • 0 • written 8.6 years ago by ▴ 90
2
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6
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3.9k
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Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Would you include in a differential gene expression analysis?
RNA-Seq alignment
8.5 years ago by achamess ▴ 90
0
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0
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3.9k
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Answer: A: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
8.5 years ago by achamess ▴ 90
0
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1
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3.9k
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Comment: C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
8.5 years ago by achamess ▴ 90
0
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0
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3.9k
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Comment: C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
8.5 years ago by achamess ▴ 90
0
votes
1
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5.2k
views
Comment: C: Code for iteratively executing an alignment package (Kallisto) on multiple files
8.6 years ago by achamess ▴ 90
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