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2.9k
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Comment: Comment: VCF2MAF structural variant file issue.
16 days ago by eebloom ▴ 90
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272
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How best to classify consensus SVs merged from multiple callers
SV annotation variants nanopore WGS
3 months ago by eebloom ▴ 90
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0
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3.2k
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Comment: Comment: [E::bwa_idx_load_from_disk] fail to locate the index files [main_samview] fail t
4 months ago by eebloom ▴ 90
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1
reply
471
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assembling human mitochondrial genomes with nanopore long reads
ONT assembly genome mitochondria nanopore
6 months ago by eebloom ▴ 90
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0
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1.6k
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Comment: Comment: somatic variant calling without matched normal in long-reads
6 months ago by eebloom ▴ 90
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0
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714
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Comment: Comment: somatic copy number calling with ONT long-reads
7 months ago by eebloom ▴ 90
1
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2
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714
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somatic copy number calling with ONT long-reads
ONT somatic cancer CNV nanopore
7 months ago by eebloom ▴ 90
1
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1
reply
474
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Generally how are non-canonical chromosomes treated in human variation studies
variants SV assembly WGS
updated 8 months ago by 151k • written 8 months ago by ▴ 90
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0
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481
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somatic SV calling with bionano optical mapping data
OM SV bionano alignment variants
9 months ago by eebloom ▴ 90
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0
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447
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whatshap ploidy error on female sample
ONT ploidy phasing nanopore
updated 10 months ago by 45k • written 10 months ago by ▴ 90
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0
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793
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Comment: Comment: Annotating enhancer elements (GRCh38)
10 months ago by eebloom ▴ 90
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2
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793
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Annotating enhancer elements (GRCh38)
annotation features enhancers
10 months ago by eebloom ▴ 90
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0
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790
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Comment: Comment: read length in structural variant calling
13 months ago by eebloom ▴ 90
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0
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1.7k
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Comment: Comment: Downsampling long-read BAM files
13 months ago by eebloom ▴ 90
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1
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1.1k
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Comment: Comment: Do I need to go back and filter my long-reads?
13 months ago by eebloom ▴ 90
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1
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1.1k
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Comment: Comment: Do I need to go back and filter my long-reads?
13 months ago by eebloom ▴ 90
1
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7
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1.7k
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Downsampling long-read BAM files
nanopore BAM QC ONT downsampling
13 months ago by eebloom ▴ 90
1
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1
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1.7k
views
Answer: Answer: Downsampling long-read BAM files
13 months ago by eebloom ▴ 90
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0
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1.8k
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Comment: Comment: Downsampling fastq file
14 months ago by eebloom ▴ 90
1
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6
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1.1k
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Do I need to go back and filter my long-reads?
alignment nanopore filtering QC ONT
updated 13 months ago by 151k • written 14 months ago by ▴ 90
1
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0
replies
453
views
phasing tumor long-reads
nanopore ONT haplotag phasing tumor
13 months ago by eebloom ▴ 90
0
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1
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1.7k
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Comment: Comment: Downsampling long-read BAM files
14 months ago by eebloom ▴ 90
1
vote
2
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790
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read length in structural variant calling
nanopore SV QC ONT variant
13 months ago by eebloom ▴ 90
0
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0
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984
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Comment: Comment: comparing VCF files
14 months ago by eebloom ▴ 90
0
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2
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984
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comparing VCF files
long-reads VCF variants ONT nanopore
14 months ago by eebloom ▴ 90
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0
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1.6k
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Comment: Comment: somatic variant calling without matched normal in long-reads
14 months ago by eebloom ▴ 90
3
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6
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1.6k
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somatic variant calling without matched normal in long-reads
variants cancer illumina ONT nanopore
6 months ago by eebloom ▴ 90
0
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0
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1.6k
views
Comment: Comment: somatic variant calling without matched normal in long-reads
17 months ago by eebloom ▴ 90
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0
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1.4k
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Comment: Comment: Filtering long read data
17 months ago by eebloom ▴ 90
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0
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5.2k
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Comment: Comment: Basecalling with dorado
17 months ago by eebloom ▴ 90
2
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3
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1.4k
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Filtering long read data
dorado alignment filtering QC nanopore
17 months ago by eebloom ▴ 90
1
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4
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2.6k
views
Filtering qscore on dorado
dorado filtering QC nanopore Guppy
13 months ago by eebloom ▴ 90
0
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0
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2.6k
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Answer: Answer: Filtering qscore on dorado
13 months ago by eebloom ▴ 90
0
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1
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2.6k
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Comment: Comment: Filtering qscore on dorado
19 months ago by eebloom ▴ 90
2
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6
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5.2k
views
Basecalling with dorado
variants dorado alignment methylation nanopore
17 months ago by eebloom ▴ 90
1
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0
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5.2k
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Comment: Comment: Basecalling with dorado
updated 20 months ago by 7.6k • written 20 months ago by ▴ 90
0
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1
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5.2k
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Comment: Comment: Basecalling with dorado
20 months ago by eebloom ▴ 90
0
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1
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5.2k
views
Comment: Comment: Basecalling with dorado
20 months ago by eebloom ▴ 90
1
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0
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2.8k
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Answer: Answer: Minfi probe filtering
20 months ago by eebloom ▴ 90
0
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0
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1.6k
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Comment: Comment: filtering sniffles variants for precise calls
2.0 years ago by eebloom ▴ 90
0
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2
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1.6k
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filtering sniffles variants for precise calls
sniffles vcf variation
2.0 years ago by eebloom ▴ 90
0
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2
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1.1k
views
Comparing variant calls
bedtools VCF bcftools
updated 24 months ago by 45k • written 2.2 years ago by ▴ 90
0
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0
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585
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multiple testing in 450K array data
minfi methylation 450K epigenetics statistics
2.2 years ago by eebloom ▴ 90
2
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1
reply
917
views
Controlling for FDR in 450k methylation microarray data
minfi methylation 450k limma epigenetics
updated 2.3 years ago by 5.0k • written 2.3 years ago by ▴ 90
0
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0
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866
views
Bumphunter function in minfi
minfi methylation DMR bumphunter R
updated 2.3 years ago by 89k • written 2.3 years ago by ▴ 90
0
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0
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654
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updating annotation of illumina human methylation 450k data
minfi methylation 450k annotation infinium
2.3 years ago by eebloom ▴ 90
0
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1
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1.7k
views
Comment: Comment: Dealing with missing (NA) values in my 450K methylation array dataset
2.4 years ago by eebloom ▴ 90
1
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3
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1.7k
views
Dealing with missing (NA) values in my 450K methylation array dataset
minfi PCA expression Methylation R
updated 2.4 years ago by ★ 2.1k • written 2.4 years ago by ▴ 90
0
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1
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1.4k
views
Comment: Comment: Downloading 450k methylation data from GEO
2.4 years ago by eebloom ▴ 90
0
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3
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1.4k
views
Downloading 450k methylation data from GEO
minfi 450K IDAT Methylation GEO
updated 2.4 years ago by 151k • written 2.4 years ago by ▴ 90
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