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Tumor classification question
Classification
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 160
0
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1
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2.3k
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I can't get the probe location file from metabric
metabric gistic cdf
updated 3.4 years ago by 45k • written 10.8 years ago by ▴ 160
0
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1
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2.7k
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Comment: Comment: I have two questions of spike-in data sets for microarray experiments
updated 2.6 years ago by 45k • written 9.7 years ago by ▴ 160
1
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3
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2.7k
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I have two questions of spike-in data sets for microarray experiments
microarray
updated 2.6 years ago by 45k • written 9.7 years ago by ▴ 160
0
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1
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1.8k
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Why do focal aberrations in cancer more intense than arm-length aberrations?
cancer
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 160
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0
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1.9k
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Comment: Comment: Simple question about deleted genes
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 160
0
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4
replies
1.9k
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Simple question about deleted genes
aCGH
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 160
0
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1
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1.9k
views
Comment: Comment: Simple question about deleted genes
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 160
1
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0
replies
1.7k
views
I am having trouble putting multiple maf alignments into one file so the parser can identify it as two alignments
maf
updated 3.0 years ago by 45k • written 10.1 years ago by ▴ 160
0
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0
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2.4k
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I am trying to install RNAz-2.1
RNAz
updated 3.0 years ago by 45k • written 10.1 years ago by ▴ 160
1
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0
replies
1.8k
views
Is there a good software prediction for p53 protein structure prediction?
structure-prediction
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 160
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0
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1.8k
views
Comment: Comment: Question about p53 annotations in METABRIC
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 160
1
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2
replies
1.8k
views
Question about p53 annotations in METABRIC
p53 METABRIC
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 160
1
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1
reply
2.0k
views
How to verify concurrent copy number aberration with gene expression?
Gene-expression
updated 3.1 years ago by 45k • written 10.4 years ago by ▴ 160
0
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1
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3.2k
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Comment: C: Basic idea of applying a gene signature
10.4 years ago by Avro ▴ 160
3
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4
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3.2k
views
Basic idea of applying a gene signature
gene-signature
updated 2.2 years ago by 45k • written 10.4 years ago by ▴ 160
1
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0
replies
1.9k
views
Naive Bayes classifier for identification of human tumors
bayes
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 160
0
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1
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2.6k
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Comment: C: How to select the optimal genes for neural network analysis?
10.4 years ago by Avro ▴ 160
0
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0
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2.6k
views
Comment: Comment: How to select the optimal genes for neural network analysis?
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 160
0
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1
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2.6k
views
Comment: C: How to select the optimal genes for neural network analysis?
10.4 years ago by Avro ▴ 160
0
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7
replies
2.6k
views
How to select the optimal genes for neural network analysis?
gene neural-network
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 160
0
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0
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2.6k
views
Comment: C: Ideas to determine cutoff points for cancer classification
10.4 years ago by Avro ▴ 160
1
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2
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2.6k
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Ideas to determine cutoff points for cancer classification
Machine-Learning Cutoff Statistics
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 160
0
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1
reply
2.6k
views
Comment: Comment: R.matlab loads file indefinitely
updated 4.1 years ago by 45k • written 10.5 years ago by ▴ 160
2
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3
replies
2.6k
views
R.matlab loads file indefinitely
matlab R
updated 4.1 years ago by 45k • written 10.5 years ago by ▴ 160
0
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1
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3.5k
views
Comment: C: Does someone know a literature search algorithm?
10.6 years ago by Avro ▴ 160
0
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0
replies
3.5k
views
Comment: Comment: Does someone know a literature search algorithm?
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
0
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1
reply
3.5k
views
Comment: Comment: Does someone know a literature search algorithm?
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
6
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10
replies
3.5k
views
Does someone know a literature search algorithm?
text-mining
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
1
vote
3
replies
3.4k
views
Is the default threshold of 0.1 for GISTIC2.0 good?
GISTIC2.0
updated 3.3 years ago by 45k • written 10.7 years ago by ▴ 160
0
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0
replies
15k
views
Comment: Comment: Where can I get the mouse mm9 gene annotation file?
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
5
votes
4
replies
15k
views
Where can I get the mouse mm9 gene annotation file?
mm9 annotation
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
0
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1
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3.8k
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Comment: Comment: I keep getting the following error with GD 2.49 for Circos on the mac
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
1
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3
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3.8k
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I keep getting the following error with GD 2.49 for Circos on the mac
Circos
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
0
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1
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2.7k
views
Comment: Comment: How to identify human samples with a specific mouse gene expression signature?
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
2
votes
7
replies
2.7k
views
How to identify human samples with a specific mouse gene expression signature?
Agilent Gene-expression Illumina
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
0
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0
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2.7k
views
Comment: Comment: How to identify human samples with a specific mouse gene expression signature?
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
0
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1
reply
2.7k
views
Comment: Comment: How to identify human samples with a specific mouse gene expression signature?
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 160
1
vote
1
reply
3.0k
views
Is there a nice R package to map human and mouse syntenic regions?
Synteny Bioconductor
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 160
1
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0
replies
3.4k
views
Comment: Comment: Is the default threshold of 0.1 for GISTIC2.0 good?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 160
0
votes
1
reply
2.2k
views
How to computationally predict DNA sequences that contain no gene or miRNA?
prediction
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 160
0
votes
1
reply
20k
views
Comment: Comment: How to convert Illumina probe expression data into gene expression data?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 160
8
votes
3
replies
20k
views
How to convert Illumina probe expression data into gene expression data?
HT-12 Illumina
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 160
0
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1
reply
2.0k
views
Visualizing aCGH in IGV and deletions overlapping amplifications?
IGV aCGH
updated 10.8 years ago by 20 • written 10.9 years ago by ▴ 160
2
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1
reply
3.2k
views
Is there a method as good/superior as GISTIC/JISTIC to detect cancer-driving copy number alterations?
JISTIC aCGH GISTIC
updated 3.5 years ago by 45k • written 10.9 years ago by ▴ 160
0
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0
replies
1.9k
views
How to generate LOH file with aCGH data?
Loss-of-heterozygosity
updated 3.5 years ago by 45k • written 10.9 years ago by ▴ 160
0
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0
replies
2.0k
views
Comment: C: JISTIC excluded regions
10.9 years ago by Avro ▴ 160
0
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1
reply
2.0k
views
JISTIC excluded regions
JISTIC aCGH floxed
updated 3.5 years ago by 45k • written 10.9 years ago by ▴ 160
2
votes
1
reply
1.8k
views
Does anyone know of a good video tutorial on how pair-ended sequencing works?
Sequencing Illumina
updated 3.5 years ago by 45k • written 10.9 years ago by ▴ 160
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