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9
votes
15
replies
8.4k
views
Efficient way of calculating the number of mismatches between two sets of sequences please?
alignment genome sequence
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 360
0
votes
1
reply
984
views
Continuous variable prediction from a MultiOmics dataset?
MultiOmics
updated 4.2 years ago by 20 • written 4.3 years ago by ▴ 360
0
votes
0
replies
1.8k
views
Comment: C: Ideal size of a library for miRNA ?
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 360
0
votes
1
reply
5.1k
views
Comment: C: Sailfish TPM normalization: does it take into account the size the library?
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 360
0
votes
1
reply
8.0k
views
Comment: C: How to link UCSC transcripts ids to protein ids using bioconductor ?
updated 4.9 years ago by 44k • written 10.5 years ago by ▴ 360
0
votes
0
replies
2.4k
views
Comment: C: Reporting alleles sequences for Amplicon sequencing after variant calling
updated 5.0 years ago by 44k • written 9.4 years ago by ▴ 360
0
votes
0
replies
9.2k
views
Comment: C: How to convert fastq to cram, and from cram back to fastq
5.7 years ago by Aurelie MLB ▴ 360
1
vote
2
replies
1.4k
views
[Should I used CAGE?]: gene set enrichment analysis on image analysis experimental values
gene Pathway Bioprocess
updated 5.8 years ago by 20 • written 7.4 years ago by ▴ 360
0
votes
1
reply
9.2k
views
Comment: C: How to convert fastq to cram, and from cram back to fastq
5.8 years ago by Aurelie MLB ▴ 360
1
vote
5
replies
3.4k
views
GRCh38 Annotation for non coding RNA (e.g. miRNA)
genome R
updated 6.3 years ago by ▴ 710 • written 10.3 years ago by ▴ 360
1
vote
2
replies
2.0k
views
controls for amplicon data - Which one to use and how?
amplicon DNA-seq control
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 360
0
votes
1
reply
1.4k
views
Best current ways to find TSS please (even cell dependent ones)?
genome
6.9 years ago by Aurelie MLB ▴ 360
0
votes
1
reply
3.1k
views
Comment: C: Quick question: samtool idxstats and multiple mapping
7.0 years ago by Aurelie MLB ▴ 360
3
votes
5
replies
3.1k
views
Quick question: samtool idxstats and multiple mapping
sequencing alignment
updated 7.0 years ago by 104k • written 7.0 years ago by ▴ 360
0
votes
0
replies
1.4k
views
Comment: C: [Should I used CAGE?]: gene set enrichment analysis on image analysis experiment
7.4 years ago by Aurelie MLB ▴ 360
0
votes
1
reply
3.2k
views
Comment: C: RNA-seq: how big should be the library?
8.6 years ago by Aurelie MLB ▴ 360
1
vote
2
replies
1.8k
views
Ideal size of a library for miRNA ?
RNA-Seq
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 360
2
votes
1
reply
3.6k
views
Answer: Answer: DESeq2: why the independent filtering threshold would come back as NULL please?
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 360
2
votes
2
replies
3.6k
views
DESeq2: why the independent filtering threshold would come back as NULL please?
RNA-Seq
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 360
1
vote
0
replies
5.1k
views
Comment: C: Sailfish TPM normalization: does it take into account the size the library?
8.8 years ago by Aurelie MLB ▴ 360
0
votes
0
replies
5.1k
views
Comment: C: Sailfish TPM normalization: does it take into account the size the library?
8.8 years ago by Aurelie MLB ▴ 360
11
votes
7
replies
5.1k
views
Sailfish TPM normalization: does it take into account the size the library?
RNA-Seq
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 360
0
votes
1
reply
2.7k
views
Comment: C: Best experimental/bioinfo protocol to genotype large insertions?
9.1 years ago by Aurelie MLB ▴ 360
2
votes
3
replies
2.7k
views
Best experimental/bioinfo protocol to genotype large insertions?
next-gen Assembly sequence alignment
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 360
0
votes
0
replies
1.7k
views
Comment: Comment: Reconstruct mRNA isoform sequences from RNAseq data (+ genome edition)
updated 22 months ago by 44k • written 9.5 years ago by ▴ 360
4
votes
5
replies
1.7k
views
Reconstruct mRNA isoform sequences from RNAseq data (+ genome edition)
RNA-Seq
updated 22 months ago by 44k • written 9.5 years ago by ▴ 360
0
votes
0
replies
1.7k
views
Comment: C: Reconstruct mRNA isoform sequences from RNAseq data (+ genome edition)
9.5 years ago by Aurelie MLB ▴ 360
1
vote
1
reply
28k
views
Comment: C: DESeq2 : three factor conditions
updated 3.7 years ago by 44k • written 9.5 years ago by ▴ 360
0
votes
1
reply
28k
views
Comment: C: DESeq2 : three factor conditions
updated 3.7 years ago by 44k • written 9.5 years ago by ▴ 360
3
votes
7
replies
8.0k
views
How to link UCSC transcripts ids to protein ids using bioconductor ?
R genome gene sequence
updated 20 months ago by 44k • written 10.5 years ago by ▴ 360
19
votes
9
replies
3.2k
views
6 follow
RNA-seq: how big should be the library?
RNA-Seq
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 360
0
votes
0
replies
3.2k
views
Comment: C: RNA-seq: how big should be the library?
9.6 years ago by Aurelie MLB ▴ 360
0
votes
1
reply
13k
views
Comment: Comment: DESeq2 normalisation: is the size of the gene taken into account?
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 360
0
votes
0
replies
3.4k
views
Comment: Comment: DESeq2 with 2 factors: problem to fit the negative binomial and weird p-value di
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 360
1
vote
2
replies
3.4k
views
DESeq2 with 2 factors: problem to fit the negative binomial and weird p-value distributions
DESeq2 RNA-Seq
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 360
22
votes
15
replies
13k
views
DESeq2 normalisation: is the size of the gene taken into account?
RNA-Seq
updated 2.0 years ago by 44k • written 9.6 years ago by ▴ 360
0
votes
0
replies
13k
views
Comment: C: DESeq2 normalisation: is the size of the gene taken into account?
9.6 years ago by Aurelie MLB ▴ 360
0
votes
0
replies
13k
views
Comment: C: DESeq2 normalisation: is the size of the gene taken into account?
9.6 years ago by Aurelie MLB ▴ 360
0
votes
1
reply
13k
views
Comment: Comment: DESeq2 normalisation: is the size of the gene taken into account?
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 360
0
votes
0
replies
2.0k
views
Comment: C: controls for amplicon data - Which one to use and how?
9.6 years ago by Aurelie MLB ▴ 360
0
votes
2
replies
2.4k
views
Reporting alleles sequences for Amplicon sequencing after variant calling
DNA-seq
updated 23 months ago by 44k • written 9.6 years ago by ▴ 360
2
votes
2
replies
8.4k
views
Comment: Comment: Efficient way of calculating the number of mismatches between two sets of sequen
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 360
0
votes
0
replies
8.4k
views
Comment: C: Efficient way of calculating the number of mismatches between two sets of sequen
10.0 years ago by Aurelie MLB ▴ 360
0
votes
0
replies
8.4k
views
Comment: Comment: Efficient way of calculating the number of mismatches between two sets of sequen
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 360
0
votes
1
reply
8.4k
views
Comment: C: Efficient way of calculating the number of mismatches between two sets of sequen
10.0 years ago by Aurelie MLB ▴ 360
0
votes
1
reply
8.4k
views
Comment: C: Efficient way of calculating the number of mismatches between two sets of sequen
10.0 years ago by Aurelie MLB ▴ 360
0
votes
0
replies
8.4k
views
Comment: C: Efficient way of calculating the number of mismatches between two sets of sequen
10.0 years ago by Aurelie MLB ▴ 360
1
vote
15
replies
4.7k
views
Ultrafast alignment of short sequences to a genome (with up to 5 mismatches!)
genome alignment
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 360
0
votes
0
replies
3.4k
views
Comment: Comment: Does repeat masker remove all repeats or does it keep the first instance ?
updated 3.6 years ago by 44k • written 10.1 years ago by ▴ 360
3
votes
2
replies
3.4k
views
Does repeat masker remove all repeats or does it keep the first instance ?
genome
updated 3.6 years ago by 44k • written 10.1 years ago by ▴ 360
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