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Comment: C: I'M Looking For A Bioinformatics Problem Which Could Benefit From A New Or Impro
updated 4.1 years ago by 44k • written 10.5 years ago by ▴ 170
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13k
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Comment: C: Convert multiple-sequence fasta file to single long sequence
updated 5.0 years ago by 44k • written 5.2 years ago by ▴ 170
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1
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298k
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Comment: C: How To Filter Mapped Reads With Samtools
5.1 years ago by chefarov ▴ 170
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3.1k
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Comment: C: Question: Samtools Select SAM Flag for unpaired uniquely reads
5.1 years ago by chefarov ▴ 170
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2
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934
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Small DNA-seq read files for tests
dna-seq next-gen
6.1 years ago by chefarov ▴ 170
3
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2
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2.1k
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Is there a DNA de-novo assembler parallelized for PBS/torque environment?
PBS de-novo-assembly torque
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 170
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0
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3.0k
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Comment: C: NCBI API for finding accession numbers?
6.2 years ago by chefarov ▴ 170
27
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7
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34k
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Is Paired End analysis possible with FASTQC?
dna-seq QC paired-end fastqc
updated 22 months ago by 44k • written 8.5 years ago by ▴ 170
2
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1
reply
1.6k
views
bowtie2 messes up headers with sequences in output
bowtie2 sam
updated 6.9 years ago by ★ 3.9k • written 6.9 years ago by ▴ 170
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2
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2.8k
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Comment: C: SAM/BAM: Extract sequences which aligned once and also don't overlap with any ot
7.0 years ago by chefarov ▴ 170
6
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6
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2.8k
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SAM/BAM: Extract sequences which aligned once and also don't overlap with any other sequence
sam bam alignment bowtie2 samtools
7.0 years ago by chefarov ▴ 170
0
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0
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4.2k
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Comment: C: How to extract unique mapped results from BWA results?
7.0 years ago by chefarov ▴ 170
0
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1
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9.6k
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Comment: C: Extract uniquely mapped reads from bam file
7.0 years ago by chefarov ▴ 170
0
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0
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43k
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Comment: C: How to extract unique mapped results from Bowtie2 bam results?
7.0 years ago by chefarov ▴ 170
1
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1
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37k
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Comment: C: samtools (conversion from .sam to .bam) and sorting of .bam file
7.0 years ago by chefarov ▴ 170
2
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1
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1.4k
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what happens when blast is run with default query "-"?
blast blastx
7.0 years ago by chefarov ▴ 170
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2
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5.1k
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Comment: C: GAWN - Genome Annotation Without Nightmares
7.1 years ago by chefarov ▴ 170
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1
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2.3k
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Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.1 years ago by chefarov ▴ 170
1
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0
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2.3k
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Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.1 years ago by chefarov ▴ 170
0
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1
reply
2.3k
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Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.1 years ago by chefarov ▴ 170
0
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1
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2.3k
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Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.1 years ago by chefarov ▴ 170
6
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8
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2.3k
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From evidence-based alignments on de-novo assembly, to gene identification
gene-prediction de-novo next-gen alignment gene
7.1 years ago by chefarov ▴ 170
2
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1
reply
3.3k
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Comment: Comment: De-Novo Assembly pipeline on hadoop
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 170
6
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4
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3.3k
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De-Novo Assembly pipeline on hadoop
next-gen rna-seq hadoop Assembly dna-seq
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 170
1
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0
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3.3k
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Comment: Comment: De-Novo Assembly pipeline on hadoop
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 170
0
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1
reply
34k
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Comment: C: Is Paired End analysis possible with FASTQC?
8.5 years ago by chefarov ▴ 170
0
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0
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34k
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Comment: C: Is Paired End analysis possible with FASTQC?
8.5 years ago by chefarov ▴ 170
0
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0
replies
2.0k
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Clustering Blast overlapping alignments
gene-prediction blast sequence dna-seq alignment
updated 2.1 years ago by 44k • written 9.2 years ago by ▴ 170
1
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0
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2.1k
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Comment: Comment: Is there a DNA de-novo assembler parallelized for PBS/torque environment?
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 170
0
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0
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2.4k
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Comment: Comment: DNA de-novo assembly for plants different than rest organisms?
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 170
3
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4
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2.4k
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DNA de-novo assembly for plants different than rest organisms?
de-novo-assembly dna-assembly plants
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 170
0
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0
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2.4k
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Comment: C: DNA de-novo assembly for plants different than rest organisms?
10.1 years ago by chefarov ▴ 170
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