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4.6k
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Comment: C: I'M Looking For A Bioinformatics Problem Which Could Benefit From A New Or Impro
updated 4.5 years ago by 45k • written 10.8 years ago by ▴ 170
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0
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14k
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Comment: C: Convert multiple-sequence fasta file to single long sequence
updated 5.4 years ago by 45k • written 5.5 years ago by ▴ 170
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1
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305k
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Comment: C: How To Filter Mapped Reads With Samtools
5.5 years ago by chefarov ▴ 170
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0
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3.3k
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Comment: C: Question: Samtools Select SAM Flag for unpaired uniquely reads
5.5 years ago by chefarov ▴ 170
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2
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1.0k
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Small DNA-seq read files for tests
dna-seq next-gen
6.5 years ago by chefarov ▴ 170
3
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2
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2.2k
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Is there a DNA de-novo assembler parallelized for PBS/torque environment?
PBS de-novo-assembly torque
updated 3.1 years ago by 45k • written 10.4 years ago by ▴ 170
0
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0
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3.1k
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Comment: C: NCBI API for finding accession numbers?
6.6 years ago by chefarov ▴ 170
27
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7
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35k
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Is Paired End analysis possible with FASTQC?
dna-seq QC paired-end fastqc
updated 2.2 years ago by 45k • written 8.9 years ago by ▴ 170
2
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1
reply
1.7k
views
bowtie2 messes up headers with sequences in output
bowtie2 sam
updated 7.3 years ago by ★ 4.0k • written 7.3 years ago by ▴ 170
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2
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2.9k
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Comment: C: SAM/BAM: Extract sequences which aligned once and also don't overlap with any ot
7.3 years ago by chefarov ▴ 170
6
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6
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2.9k
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SAM/BAM: Extract sequences which aligned once and also don't overlap with any other sequence
sam bam alignment bowtie2 samtools
7.3 years ago by chefarov ▴ 170
0
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0
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4.3k
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Comment: C: How to extract unique mapped results from BWA results?
7.3 years ago by chefarov ▴ 170
0
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1
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10.0k
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Comment: C: Extract uniquely mapped reads from bam file
7.3 years ago by chefarov ▴ 170
0
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0
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43k
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Comment: C: How to extract unique mapped results from Bowtie2 bam results?
7.3 years ago by chefarov ▴ 170
1
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1
reply
39k
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Comment: C: samtools (conversion from .sam to .bam) and sorting of .bam file
7.3 years ago by chefarov ▴ 170
2
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1
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1.5k
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what happens when blast is run with default query "-"?
blast blastx
7.4 years ago by chefarov ▴ 170
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2
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5.4k
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Comment: C: GAWN - Genome Annotation Without Nightmares
7.5 years ago by chefarov ▴ 170
0
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1
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2.5k
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Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.5 years ago by chefarov ▴ 170
1
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0
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2.5k
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Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.5 years ago by chefarov ▴ 170
0
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1
reply
2.5k
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Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.5 years ago by chefarov ▴ 170
0
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1
reply
2.5k
views
Comment: C: From evidence-based alignments on de-novo assembly, to gene identification
7.5 years ago by chefarov ▴ 170
6
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8
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2.5k
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From evidence-based alignments on de-novo assembly, to gene identification
gene-prediction de-novo next-gen alignment gene
7.5 years ago by chefarov ▴ 170
2
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1
reply
3.5k
views
Comment: Comment: De-Novo Assembly pipeline on hadoop
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 170
6
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4
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3.5k
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De-Novo Assembly pipeline on hadoop
next-gen rna-seq hadoop Assembly dna-seq
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 170
1
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0
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3.5k
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Comment: Comment: De-Novo Assembly pipeline on hadoop
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 170
0
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1
reply
35k
views
Comment: C: Is Paired End analysis possible with FASTQC?
8.9 years ago by chefarov ▴ 170
0
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0
replies
35k
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Comment: C: Is Paired End analysis possible with FASTQC?
8.9 years ago by chefarov ▴ 170
0
votes
0
replies
2.0k
views
Clustering Blast overlapping alignments
gene-prediction blast sequence dna-seq alignment
updated 2.5 years ago by 45k • written 9.6 years ago by ▴ 170
1
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0
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2.2k
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Comment: Comment: Is there a DNA de-novo assembler parallelized for PBS/torque environment?
updated 3.1 years ago by 45k • written 10.4 years ago by ▴ 170
0
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0
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2.5k
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Comment: Comment: DNA de-novo assembly for plants different than rest organisms?
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 170
3
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4
replies
2.5k
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DNA de-novo assembly for plants different than rest organisms?
de-novo-assembly dna-assembly plants
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 170
0
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0
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2.5k
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Comment: C: DNA de-novo assembly for plants different than rest organisms?
10.4 years ago by chefarov ▴ 170
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