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Answer: Answer: Get chromosome sizes from fasta file
3 months ago by alejandrogzi ▴ 140
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76k
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Answer: Answer: Sequence length from Fasta
3 months ago by alejandrogzi ▴ 140
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4.4k
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Answer: Answer: GFF3 to 12-column BED
9 months ago by alejandrogzi ▴ 140
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17k
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Answer: Answer: conversion of GFF3 formate to BED format
9 months ago by alejandrogzi ▴ 140
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514
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Tool: gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert gff gtf bed
9 months ago by alejandrogzi ▴ 140
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1.1k
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Fastest way to convert BED to GTF/GFF with gene_ids?
gff convert bed gtf
updated 11 months ago by ★ 4.0k • written 11 months ago by ▴ 140
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1.1k
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Answer: Answer: Fastest way to convert BED to GTF/GFF with gene_ids?
11 months ago by alejandrogzi ▴ 140
4
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679
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Tool: NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
gene-annotation exon-length
updated 5 months ago by • 0 • written 12 months ago by ▴ 140
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36k
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Answer: Answer: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
12 months ago by alejandrogzi ▴ 140
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1.3k
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Answer: Answer: Extracting exons using GenomicFeatures is different from manual extraction
12 months ago by alejandrogzi ▴ 140
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16k
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Comment: Comment: Converting from BED to SAF/GFF
13 months ago by alejandrogzi ▴ 140
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16k
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Answer: Answer: Converting from BED to SAF/GFF
13 months ago by alejandrogzi ▴ 140
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6.6k
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Comment: Comment: Convert bed12 to GFF
13 months ago by alejandrogzi ▴ 140
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4.0k
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Comment: Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
13 months ago by alejandrogzi ▴ 140
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32k
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Answer: Answer: How Do I Convert From Bed Format To Gff Format?
updated 13 months ago by 44k • written 13 months ago by ▴ 140
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24k
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Comment: Comment: Is there a tool that sorts gtf files?
14 months ago by alejandrogzi ▴ 140
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2.4k
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Answer: Answer: GTF files from Ensembl Releases 105 and 106 unsorted
14 months ago by alejandrogzi ▴ 140
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1.6k
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Answer: Answer: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
14 months ago by alejandrogzi ▴ 140
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24k
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Answer: Answer: Is there a tool that sorts gtf files?
14 months ago by alejandrogzi ▴ 140
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7.0k
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Answer: Answer: How to order a gff3 file by coordinates
14 months ago by alejandrogzi ▴ 140
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4.6k
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Answer: Answer: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
14 months ago by alejandrogzi ▴ 140
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946
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Answer: Answer: convert bed12 to sorted gtf
13 months ago by alejandrogzi ▴ 140
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2
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6.6k
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Answer: Answer: Convert bed12 to GFF
14 months ago by alejandrogzi ▴ 140
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1.6k
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Answer: Answer: How to change scaffold.fasta file or scaffold.bed file to GTF file?
15 months ago by alejandrogzi ▴ 140
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930
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Answer: Answer: Where to get a reference gene model in bed fomat? Is the only option converting
15 months ago by alejandrogzi ▴ 140
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1
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4.0k
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Comment: Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
15 months ago by alejandrogzi ▴ 140
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0
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5.4k
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Answer: Answer: How to convert original BED file to a GTF ?
15 months ago by alejandrogzi ▴ 140
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30k
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Answer: Answer: How To Convert Bed Format To Gtf?
15 months ago by alejandrogzi ▴ 140
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0
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972
views
Comment: Comment: Differential transcript usage from Salmon data
23 months ago by alejandrogzi ▴ 140
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