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Answer: Answer: GFF3 to 12-column BED
3 months ago by alejandrogzi ▴ 120
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15k
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Answer: Answer: conversion of GFF3 formate to BED format
3 months ago by alejandrogzi ▴ 120
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271
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Tool: gxf2bed: A high-performance GTF/GFF-to-BED converter written in Rust
convert gff gtf bed
3 months ago by alejandrogzi ▴ 120
5
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2
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703
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Fastest way to convert BED to GTF/GFF with gene_ids?
gff convert bed gtf
updated 5 months ago by ★ 3.8k • written 5 months ago by ▴ 120
3
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1
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703
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Answer: Answer: Fastest way to convert BED to GTF/GFF with gene_ids?
5 months ago by alejandrogzi ▴ 120
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475
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Tool: NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
gene-annotation exon-length
5 months ago by alejandrogzi ▴ 120
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34k
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Answer: Answer: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
6 months ago by alejandrogzi ▴ 120
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1.1k
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Answer: Answer: Extracting exons using GenomicFeatures is different from manual extraction
6 months ago by alejandrogzi ▴ 120
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0
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15k
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Comment: Comment: Converting from BED to SAF/GFF
7 months ago by alejandrogzi ▴ 120
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1
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15k
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Answer: Answer: Converting from BED to SAF/GFF
7 months ago by alejandrogzi ▴ 120
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6.0k
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Comment: Comment: Convert bed12 to GFF
7 months ago by alejandrogzi ▴ 120
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3.8k
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Comment: Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
7 months ago by alejandrogzi ▴ 120
1
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0
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31k
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Answer: Answer: How Do I Convert From Bed Format To Gff Format?
updated 7 months ago by 43k • written 7 months ago by ▴ 120
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22k
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Comment: Comment: Is there a tool that sorts gtf files?
8 months ago by alejandrogzi ▴ 120
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2.0k
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Answer: Answer: GTF files from Ensembl Releases 105 and 106 unsorted
8 months ago by alejandrogzi ▴ 120
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1.3k
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Answer: Answer: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
8 months ago by alejandrogzi ▴ 120
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1
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22k
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Answer: Answer: Is there a tool that sorts gtf files?
8 months ago by alejandrogzi ▴ 120
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6.5k
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Answer: Answer: How to order a gff3 file by coordinates
8 months ago by alejandrogzi ▴ 120
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4.1k
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Answer: Answer: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
8 months ago by alejandrogzi ▴ 120
0
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0
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804
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Answer: Answer: convert bed12 to sorted gtf
7 months ago by alejandrogzi ▴ 120
1
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1
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6.0k
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Answer: Answer: Convert bed12 to GFF
8 months ago by alejandrogzi ▴ 120
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1.4k
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Answer: Answer: How to change scaffold.fasta file or scaffold.bed file to GTF file?
9 months ago by alejandrogzi ▴ 120
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0
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792
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Answer: Answer: Where to get a reference gene model in bed fomat? Is the only option converting
9 months ago by alejandrogzi ▴ 120
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1
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3.8k
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Comment: Comment: Converting different annotation file formats (GTF/GFF/BED) to each other
9 months ago by alejandrogzi ▴ 120
0
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0
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5.1k
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Answer: Answer: How to convert original BED file to a GTF ?
9 months ago by alejandrogzi ▴ 120
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0
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29k
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Answer: Answer: How To Convert Bed Format To Gtf?
9 months ago by alejandrogzi ▴ 120
0
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0
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849
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Comment: Comment: Differential transcript usage from Salmon data
16 months ago by alejandrogzi ▴ 120
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