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581
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Comment: Comment: Problem merging plink files for somatic variants.
8 months ago by Palgrave ▴ 130
0
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2
replies
581
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Problem merging plink files for somatic variants.
plink somatic vcf
8 months ago by Palgrave ▴ 130
1
vote
1
reply
403
views
convert and merge somatic vcf file to plink format
gwas plink vcf
updated 8 months ago by 4.5k • written 8 months ago by ▴ 130
2
votes
1
reply
602
views
Overview of NCBI virus types (DNA, RNA, ssDNA etc...)
NCBI virus
updated 2.1 years ago by 147k • written 2.1 years ago by ▴ 130
0
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0
replies
1.3k
views
Bootstrap coxph model in R
coxph bootstrap R
2.9 years ago by Palgrave ▴ 130
1
vote
1
reply
954
views
GATK mutech2: Sample not found in BAM header
GATK
updated 3.1 years ago by ▴ 160 • written 3.1 years ago by ▴ 130
3
votes
0
replies
600
views
MARS-seq
MARS-Seq single-cell
3.1 years ago by Palgrave ▴ 130
0
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0
replies
634
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STAR-aligner: genome load in a for-loop
STAR STAR-aligner
3.1 years ago by Palgrave ▴ 130
0
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0
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1.1k
views
Comment: Comment: LOOCV on limma results
3.5 years ago by Palgrave ▴ 130
3
votes
2
replies
2.1k
views
hisat2 output from paired en reads.
hisat2 rna-seq
updated 3.6 years ago by ★ 2.2k • written 3.6 years ago by ▴ 130
1
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0
replies
795
views
Methylation frequency + and - strand
methylation Bismark
3.6 years ago by Palgrave ▴ 130
0
votes
1
reply
928
views
Different results in limma if group is removed
limma edgeR
updated 3.6 years ago by 88k • written 3.6 years ago by ▴ 130
0
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2
replies
1.1k
views
LOOCV on limma results
loocv limma cross-validation
3.5 years ago by Palgrave ▴ 130
0
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1
reply
1.4k
views
Comment: Comment: extract unmapped reads from WGS data - which samtools parameters to choose
3.6 years ago by Palgrave ▴ 130
0
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4
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1.4k
views
extract unmapped reads from WGS data - which samtools parameters to choose
WGS Sequencing
updated 3.6 years ago by ▴ 590 • written 3.6 years ago by ▴ 130
0
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0
replies
12k
views
Comment: Comment: samtools multithreads
3.6 years ago by Palgrave ▴ 130
3
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4
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12k
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samtools multithreads
samtools
3.6 years ago by Palgrave ▴ 130
0
votes
1
reply
4.2k
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Comment: Comment: Get unmapped reads from cram/bam file
3.7 years ago by Palgrave ▴ 130
0
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1
reply
4.2k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.7 years ago by Palgrave ▴ 130
2
votes
13
replies
4.2k
views
Get unmapped reads from cram/bam file
alignment
updated 3.7 years ago by 85k • written 3.7 years ago by ▴ 130
0
votes
1
reply
4.2k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.7 years ago by Palgrave ▴ 130
0
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0
replies
4.2k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.7 years ago by Palgrave ▴ 130
0
votes
1
reply
4.2k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.7 years ago by Palgrave ▴ 130
0
votes
1
reply
1.9k
views
Dispersion and variance in RNA-seq explained.
RNA-Seq
updated 2.7 years ago by 44k • written 3.7 years ago by ▴ 130
0
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0
replies
874
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cross validation output interpretation from survival analysis
survival R coxph cross-validation
updated 4.0 years ago by 88k • written 4.0 years ago by ▴ 130
0
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0
replies
1.8k
views
DimPlot: labels clusters with sample name
RNA-Seq sequencing R Seurat
updated 4.0 years ago by 44k • written 4.0 years ago by ▴ 130
0
votes
1
reply
821
views
Differentially expression from a TPM-normalized single-cell data frame
RNA-seq R next-gen-sequencing
updated 20 months ago by 44k • written 4.0 years ago by ▴ 130
2
votes
2
replies
2.8k
views
Convert ID for Human Gene 1.0 ST Array
R microarray affymetrix
updated 4.3 years ago by 147k • written 4.3 years ago by ▴ 130
1
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5
replies
1.2k
views
Get read counts for reads overlapping exon-intron junction from STAR-output
STAR rna-seq
4.7 years ago by Palgrave ▴ 130
0
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1
reply
1.2k
views
Comment: C: Get splice-read counts from STAR-output
4.7 years ago by Palgrave ▴ 130
0
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1
reply
1.2k
views
Comment: C: Get splice-read counts from STAR-output
4.7 years ago by Palgrave ▴ 130
0
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1
reply
4.8k
views
Comment: C: Kaplan Meier curves in R
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 130
0
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0
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2.8k
views
Comment: C: Correlation between two expression matrices in blood and tumor
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 130
0
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1
reply
8.6k
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Comment: A: Gene Expression Correlation
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 130
0
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1
reply
101k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 5.0 years ago by 44k • written 8.8 years ago by ▴ 130
0
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1
reply
5.8k
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Comment: C: Align two fasta files against each other
5.3 years ago by Palgrave ▴ 130
0
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1
reply
1.7k
views
Comment: A: Find 3'UTRs for species
5.3 years ago by Palgrave ▴ 130
5
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7
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1.7k
views
Find 3'UTRs for species
Assembly alignment
updated 17 months ago by 44k • written 5.3 years ago by ▴ 130
4
votes
4
replies
5.8k
views
Align two fasta files against each other
alignment
5.3 years ago by Palgrave ▴ 130
0
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1
reply
1.7k
views
Comment: C: Find 3'UTRs for species
5.3 years ago by Palgrave ▴ 130
1
vote
1
reply
1.7k
views
Comment: A: Find 3'UTRs for species
5.3 years ago by Palgrave ▴ 130
0
votes
1
reply
101k
views
Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 7.6 years ago by 44k • written 8.9 years ago by ▴ 130
0
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0
replies
5.9k
views
Comment: C: Expression Matrix And Pearson'S Correlation Coefficient
8.8 years ago by Palgrave ▴ 130
0
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1
reply
101k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.8 years ago by Palgrave ▴ 130
2
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3
replies
4.8k
views
Kaplan Meier curves in R
RNA-Seq R survival
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 130
0
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1
reply
2.8k
views
Comment: C: Correlation between two expression matrices in blood and tumor
8.8 years ago by Palgrave ▴ 130
0
votes
1
reply
2.8k
views
Comment: C: Correlation between two expression matrices in blood and tumor
8.8 years ago by Palgrave ▴ 130
1
vote
7
replies
2.8k
views
Correlation between two expression matrices in blood and tumor
R rna-seq
updated 8.8 years ago by 104k • written 8.8 years ago by ▴ 130
1
vote
0
replies
1.8k
views
miRNA isomiR analysis using Biostrings
sequence R
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 130
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