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843
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Comment: Comment: Problem merging plink files for somatic variants.
13 months ago by Palgrave ▴ 140
0
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2
replies
843
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Problem merging plink files for somatic variants.
plink somatic vcf
13 months ago by Palgrave ▴ 140
1
vote
1
reply
586
views
convert and merge somatic vcf file to plink format
gwas plink vcf
updated 13 months ago by 4.9k • written 13 months ago by ▴ 140
2
votes
1
reply
698
views
Overview of NCBI virus types (DNA, RNA, ssDNA etc...)
NCBI virus
updated 2.6 years ago by 151k • written 2.6 years ago by ▴ 140
0
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0
replies
1.4k
views
Bootstrap coxph model in R
coxph bootstrap R
3.4 years ago by Palgrave ▴ 140
1
vote
1
reply
1.2k
views
GATK mutech2: Sample not found in BAM header
GATK
updated 3.5 years ago by ▴ 160 • written 3.5 years ago by ▴ 140
3
votes
0
replies
663
views
MARS-seq
MARS-Seq single-cell
3.5 years ago by Palgrave ▴ 140
0
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0
replies
708
views
STAR-aligner: genome load in a for-loop
STAR STAR-aligner
3.6 years ago by Palgrave ▴ 140
0
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0
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1.3k
views
Comment: Comment: LOOCV on limma results
4.0 years ago by Palgrave ▴ 140
3
votes
2
replies
2.2k
views
hisat2 output from paired en reads.
hisat2 rna-seq
updated 4.0 years ago by ★ 2.2k • written 4.0 years ago by ▴ 140
1
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0
replies
863
views
Methylation frequency + and - strand
methylation Bismark
4.0 years ago by Palgrave ▴ 140
0
votes
1
reply
998
views
Different results in limma if group is removed
limma edgeR
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 140
0
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2
replies
1.3k
views
LOOCV on limma results
loocv limma cross-validation
4.0 years ago by Palgrave ▴ 140
0
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1
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1.5k
views
Comment: Comment: extract unmapped reads from WGS data - which samtools parameters to choose
4.1 years ago by Palgrave ▴ 140
0
votes
4
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1.5k
views
extract unmapped reads from WGS data - which samtools parameters to choose
WGS Sequencing
updated 4.1 years ago by ▴ 590 • written 4.1 years ago by ▴ 140
1
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0
replies
14k
views
Comment: Comment: samtools multithreads
4.1 years ago by Palgrave ▴ 140
5
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4
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14k
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samtools multithreads
samtools
4.1 years ago by Palgrave ▴ 140
0
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1
reply
4.8k
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Comment: Comment: Get unmapped reads from cram/bam file
4.1 years ago by Palgrave ▴ 140
0
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1
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4.8k
views
Comment: Comment: Get unmapped reads from cram/bam file
4.1 years ago by Palgrave ▴ 140
2
votes
13
replies
4.8k
views
Get unmapped reads from cram/bam file
alignment
updated 4.1 years ago by 87k • written 4.1 years ago by ▴ 140
0
votes
1
reply
4.8k
views
Comment: Comment: Get unmapped reads from cram/bam file
4.1 years ago by Palgrave ▴ 140
0
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0
replies
4.8k
views
Comment: Comment: Get unmapped reads from cram/bam file
4.1 years ago by Palgrave ▴ 140
0
votes
1
reply
4.8k
views
Comment: Comment: Get unmapped reads from cram/bam file
4.1 years ago by Palgrave ▴ 140
0
votes
1
reply
2.1k
views
Dispersion and variance in RNA-seq explained.
RNA-Seq
updated 3.2 years ago by 45k • written 4.1 years ago by ▴ 140
0
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0
replies
944
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cross validation output interpretation from survival analysis
survival R coxph cross-validation
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 140
0
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0
replies
1.9k
views
DimPlot: labels clusters with sample name
RNA-Seq sequencing R Seurat
updated 4.4 years ago by 45k • written 4.4 years ago by ▴ 140
0
votes
1
reply
899
views
Differentially expression from a TPM-normalized single-cell data frame
RNA-seq R next-gen-sequencing
updated 2.1 years ago by 45k • written 4.5 years ago by ▴ 140
2
votes
2
replies
3.1k
views
Convert ID for Human Gene 1.0 ST Array
R microarray affymetrix
updated 4.7 years ago by 151k • written 4.7 years ago by ▴ 140
1
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5
replies
1.5k
views
Get read counts for reads overlapping exon-intron junction from STAR-output
STAR rna-seq
5.2 years ago by Palgrave ▴ 140
0
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1
reply
1.5k
views
Comment: C: Get splice-read counts from STAR-output
5.2 years ago by Palgrave ▴ 140
0
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1
reply
1.5k
views
Comment: C: Get splice-read counts from STAR-output
5.2 years ago by Palgrave ▴ 140
0
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1
reply
5.0k
views
Comment: C: Kaplan Meier curves in R
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 140
0
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0
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3.1k
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Comment: C: Correlation between two expression matrices in blood and tumor
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 140
0
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1
reply
8.9k
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Comment: A: Gene Expression Correlation
updated 5.3 years ago by 45k • written 9.3 years ago by ▴ 140
0
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1
reply
108k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 5.4 years ago by 45k • written 9.3 years ago by ▴ 140
0
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1
reply
6.3k
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Comment: C: Align two fasta files against each other
5.7 years ago by Palgrave ▴ 140
0
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1
reply
1.9k
views
Comment: A: Find 3'UTRs for species
5.7 years ago by Palgrave ▴ 140
5
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7
replies
1.9k
views
Find 3'UTRs for species
Assembly alignment
updated 23 months ago by 45k • written 5.7 years ago by ▴ 140
4
votes
4
replies
6.3k
views
Align two fasta files against each other
alignment
5.7 years ago by Palgrave ▴ 140
0
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1
reply
1.9k
views
Comment: C: Find 3'UTRs for species
5.7 years ago by Palgrave ▴ 140
1
vote
1
reply
1.9k
views
Comment: A: Find 3'UTRs for species
5.7 years ago by Palgrave ▴ 140
0
votes
1
reply
108k
views
Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 8.1 years ago by 45k • written 9.3 years ago by ▴ 140
0
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0
replies
6.1k
views
Comment: C: Expression Matrix And Pearson'S Correlation Coefficient
9.3 years ago by Palgrave ▴ 140
0
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1
reply
108k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
9.3 years ago by Palgrave ▴ 140
2
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3
replies
5.0k
views
Kaplan Meier curves in R
RNA-Seq R survival
updated 2.8 years ago by 45k • written 9.3 years ago by ▴ 140
0
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1
reply
3.1k
views
Comment: C: Correlation between two expression matrices in blood and tumor
9.3 years ago by Palgrave ▴ 140
0
votes
1
reply
3.1k
views
Comment: C: Correlation between two expression matrices in blood and tumor
9.3 years ago by Palgrave ▴ 140
1
vote
7
replies
3.1k
views
Correlation between two expression matrices in blood and tumor
R rna-seq
updated 9.3 years ago by 105k • written 9.3 years ago by ▴ 140
1
vote
0
replies
1.8k
views
miRNA isomiR analysis using Biostrings
sequence R
updated 3.5 years ago by 45k • written 10.9 years ago by ▴ 140
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