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Comment: Comment: About runing Pilon on individual chromosomes when polish draft genome assembly
2 days ago by sansan_96 ▴ 90
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147
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Comment: Comment: Polish a large genome with Pilon
3 days ago by sansan_96 ▴ 90
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1
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147
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Polish a large genome with Pilon
Pilon Pacbio Polish Illumina
3 days ago by sansan_96 ▴ 90
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393
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Comment: Comment: Longest transcript variant per gene
6 days ago by sansan_96 ▴ 90
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393
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Comment: Comment: Longest transcript variant per gene
6 days ago by sansan_96 ▴ 90
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393
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Comment: Comment: Longest transcript variant per gene
6 days ago by sansan_96 ▴ 90
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393
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Comment: Comment: Longest transcript variant per gene
6 days ago by sansan_96 ▴ 90
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7
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393
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Longest transcript variant per gene
transcript longest variant orthofinder
6 days ago by sansan_96 ▴ 90
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340
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Comment: Comment: Perfom a Gene Ontology Analysis from GO terms txt file
19 days ago by sansan_96 ▴ 90
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1
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340
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Answer: Answer: Perfom a Gene Ontology Analysis from GO terms txt file
18 days ago by sansan_96 ▴ 90
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340
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Comment: Comment: Perfom a Gene Ontology Analysis from GO terms file
19 days ago by sansan_96 ▴ 90
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116
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Analysis of the gene family of a genome.
Genome gene-family
updated 26 days ago by 43k • written 26 days ago by ▴ 90
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373
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Comment: Comment: GSEA analysis in R
4 weeks ago by sansan_96 ▴ 90
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573
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Comment: Comment: Integration of transcriptomics and proteomics: difficult matching names
4 weeks ago by sansan_96 ▴ 90
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673
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Comment: Comment: BRAKER3 genome annotation
4 weeks ago by sansan_96 ▴ 90
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1
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313
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Comment: Comment: RNAseq 1 control 2 different treatment
4 weeks ago by sansan_96 ▴ 90
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1
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673
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Comment: Comment: BRAKER3 genome annotation
4 weeks ago by sansan_96 ▴ 90
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368
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Comment: Comment: Extracting information from gff3 file produced by augustus
4 weeks ago by sansan_96 ▴ 90
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302
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Answer: Answer: How do I identify gene duplication or paralogs in an annotated reference genome
5 weeks ago by sansan_96 ▴ 90
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535
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Comment: Comment: KEGG analysis in R
5 weeks ago by sansan_96 ▴ 90
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6
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535
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KEGG analysis in R
KEGG clusterProfiler Zea-mays
5 weeks ago by sansan_96 ▴ 90
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1
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535
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Comment: Comment: KEGG analysis in R
5 weeks ago by sansan_96 ▴ 90
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0
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535
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Comment: Comment: KEGG analysis in R
5 weeks ago by sansan_96 ▴ 90
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0
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383
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Comment: Comment: samtools filtering
6 weeks ago by sansan_96 ▴ 90
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1
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383
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Comment: Comment: samtools filtering
6 weeks ago by sansan_96 ▴ 90
1
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5
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383
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samtools filtering
samtools
updated 5 weeks ago by ★ 1.2k • written 6 weeks ago by ▴ 90
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370
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Comment: Comment: Convert to ENTREZGENE
7 weeks ago by sansan_96 ▴ 90
2
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2
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370
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Convert to ENTREZGENE
maize ENTREZ
7 weeks ago by sansan_96 ▴ 90
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288
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--busco_db and --busco_seed_species with RNA-seq
RNA-seq Funannotate busco
9 weeks ago by sansan_96 ▴ 90
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1
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660
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Comment: Comment: Separation of haplotypes in genome assembly
11 weeks ago by sansan_96 ▴ 90
2
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2
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403
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calculate the heterozygosity of an assembly
plant assembly Genome genome heterozygosity
updated 11 weeks ago by ▴ 600 • written 11 weeks ago by ▴ 90
5
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4
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660
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Separation of haplotypes in genome assembly
Haplotypes pacbio assembly genome reads
11 weeks ago by sansan_96 ▴ 90
5
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2
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437
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Guided genome assembly
Genome pacbio reads assembly
updated 3 months ago by ★ 2.0k • written 3 months ago by ▴ 90
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229
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Heatmap with different comparisons
DESeq2 Heatmap
updated 3 months ago by 43k • written 3 months ago by ▴ 90
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3
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517
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Enrichement with clusterProfiler and biomartr
clusterProfiler biomartr Zea-mays
updated 4 months ago by ★ 1.8k • written 4 months ago by ▴ 90
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486
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Answer: Answer: Bacterial Synteny Tools
4 months ago by sansan_96 ▴ 90
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0
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1.0k
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Comment: Comment: BUSCO duplicated
4 months ago by sansan_96 ▴ 90
1
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1
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1.0k
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Comment: Comment: BUSCO duplicated
updated 4 months ago by 142k • written 4 months ago by ▴ 90
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1.0k
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Comment: Comment: BUSCO duplicated
4 months ago by sansan_96 ▴ 90
0
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1
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1.0k
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Comment: Comment: BUSCO duplicated
updated 4 months ago by 142k • written 4 months ago by ▴ 90
9
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12
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1.0k
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BUSCO duplicated
BUSCO Trinity
updated 4 months ago by 142k • written 4 months ago by ▴ 90
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1.0k
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Comment: Comment: BUSCO duplicated
4 months ago by sansan_96 ▴ 90
0
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0
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1.0k
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Comment: Comment: BUSCO duplicated
updated 4 months ago by 142k • written 4 months ago by ▴ 90
1
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0
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818
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Comment: Comment: Getting gene counts from transcript counts using R package 'tximport'
updated 5 months ago by 43k • written 5 months ago by ▴ 90
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0
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692
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Comment: Comment: FeatureCounts Invalid Parameter Error
updated 5 months ago by 43k • written 5 months ago by ▴ 90
1
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0
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596
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Comment: Comment: Website or tool to obtain a list of genes that participate in a specific process
5 months ago by sansan_96 ▴ 90
0
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1
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658
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Comment: Comment: ORA with clusterProfiler
5 months ago by sansan_96 ▴ 90
4
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4
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658
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ORA with clusterProfiler
clusterProfiler ORA
updated 5 months ago by ▴ 30 • written 5 months ago by ▴ 90
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0
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388
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Comment: Comment: Annotation GTF/GFF Arabidopsis thaliana
5 months ago by sansan_96 ▴ 90
0
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1
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388
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Annotation GTF/GFF Arabidopsis thaliana
Arabidopsis GFF GTF Annotation
5 months ago by sansan_96 ▴ 90
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