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223
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Advisable to perform GSVA on single cells?
GSVA scRNA-seq
6 weeks ago by bio_info ▴ 20
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377
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Comment: Comment: GSVA with a genelist on a "per-cluster" basis
6 weeks ago by bio_info ▴ 20
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1
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377
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Comment: Comment: GSVA with a genelist on a "per-cluster" basis
6 weeks ago by bio_info ▴ 20
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4
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377
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GSVA with a genelist on a "per-cluster" basis
GSVA scRNA-seq genelist
6 weeks ago by bio_info ▴ 20
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1
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238
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Intermixed clusters and cell types in UMAP for scRNA-seq analysis
PBMC UMAP scRAN-seq
updated 9 weeks ago by ▴ 270 • written 9 weeks ago by ▴ 20
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1.3k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by bio_info ▴ 20
2
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11
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1.3k
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Errors with GSEA using clusterProfiler
clusterProfiler GSEA
5 months ago by bio_info ▴ 20
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245
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Comment: Comment: Clusterprofiler with M. tuberculosis genome
5 months ago by bio_info ▴ 20
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0
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1.3k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by bio_info ▴ 20
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1
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1.3k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by bio_info ▴ 20
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0
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1.3k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by bio_info ▴ 20
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1
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1.3k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by bio_info ▴ 20
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1
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1.3k
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Comment: Comment: Errors with GSEA using clusterProfiler
5 months ago by bio_info ▴ 20
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1
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789
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Comment: Comment: Slot to pull data from for DoHeatmap
5 months ago by bio_info ▴ 20
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3
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789
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Slot to pull data from for DoHeatmap
DESeq2 DoHeatmap Seurat Pseudobulk
updated 5 months ago by ★ 4.5k • written 5 months ago by ▴ 20
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0
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544
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Comment: Comment: Test custom signature using GSEA in scRNA-seq
5 months ago by bio_info ▴ 20
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1
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544
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Comment: Comment: Test custom signature using GSEA in scRNA-seq
5 months ago by bio_info ▴ 20
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4
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544
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Test custom signature using GSEA in scRNA-seq
scRNA-seq Seurat GSEA
5 months ago by bio_info ▴ 20
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0
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357
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Comment: Comment: SCPA analysis with all qvals = 0
5 months ago by bio_info ▴ 20
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317
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Answer: Answer: Query regarding single cell rna seq annotation using marker genes
5 months ago by bio_info ▴ 20
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2
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357
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SCPA analysis with all qvals = 0
scRNA-seq SCPA Seurat
5 months ago by bio_info ▴ 20
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1
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892
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Comment: Comment: Pseudobulking per patient
5 months ago by bio_info ▴ 20
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3
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892
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Pseudobulking per patient
scRNA-seq Seurat Pseudobulk
updated 5 months ago by ★ 18k • written 5 months ago by ▴ 20
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0
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579
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Comment: Comment: Overlapping clusters for different biological conditions: Seurat, UMAP
5 months ago by bio_info ▴ 20
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2
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579
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Overlapping clusters for different biological conditions: Seurat, UMAP
Seurat scRNA-seq UMAP
5 months ago by bio_info ▴ 20
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0
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691
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Comment: Comment: Error with BiocParallel. No barcodes files found
6 months ago by bio_info ▴ 20
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0
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691
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Comment: Comment: Error with BiocParallel. No barcodes files found
6 months ago by bio_info ▴ 20
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1
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691
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Comment: Comment: Error with BiocParallel. No barcodes files found
6 months ago by bio_info ▴ 20
4
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6
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691
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Error with BiocParallel. No barcodes files found
Barcodes scRNA-seq SingleCellExperiment
6 months ago by bio_info ▴ 20
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