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2.3k
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What is C-score of transcripts and how to calculate it?
genome
updated 4.6 years ago by 20 • written 8.9 years ago by ▴ 140
1
vote
3
replies
1.1k
views
Is structure variations detected in DNA panel sequencing should also be detected in whole transcriptome sequencing
DNA RNA structure variation
updated 4.6 years ago by ★ 2.9k • written 4.6 years ago by ▴ 140
1
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0
replies
2.4k
views
Some problems about CODEML
CODEML Positive selection sites PAML
updated 4.6 years ago by 20 • written 9.3 years ago by ▴ 140
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0
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1.1k
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Comment: C: Is structure variations detected in DNA panel sequencing should also be detected
4.6 years ago by Ginsea Chen ▴ 140
0
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1
reply
1.7k
views
BLAST step of GO enrichment analyses
BLAST GO
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 140
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0
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8.1k
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Answer: A: getting error in runing tblastn
updated 4.9 years ago by 44k • written 9.3 years ago by ▴ 140
2
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1
reply
5.0k
views
Answer: A: Where can I download exonerate?
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 140
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0
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2.9k
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Comment: C: Low mapping rate for human NGS PE reads to hs37d5 genome
5.1 years ago by Ginsea Chen ▴ 140
0
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1
reply
2.9k
views
Comment: C: Low mapping rate for human NGS PE reads to hs37d5 genome
5.1 years ago by Ginsea Chen ▴ 140
0
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1
reply
2.9k
views
Comment: C: Low mapping rate for human NGS PE reads to hs37d5 genome
5.1 years ago by Ginsea Chen ▴ 140
0
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1
reply
2.9k
views
Comment: C: Low mapping rate for human NGS PE reads to hs37d5 genome
5.1 years ago by Ginsea Chen ▴ 140
1
vote
0
replies
2.9k
views
Comment: C: Low mapping rate for human NGS PE reads to hs37d5 genome
5.1 years ago by Ginsea Chen ▴ 140
0
votes
0
replies
2.9k
views
Comment: C: Low mapping rate for human NGS PE reads to hs37d5 genome
5.1 years ago by Ginsea Chen ▴ 140
1
vote
12
replies
2.9k
views
Low mapping rate for human NGS PE reads to hs37d5 genome
NGS human reads hs37d5 Low mapping rate
5.1 years ago by Ginsea Chen ▴ 140
9
votes
9
replies
39k
views
Errors about ggplot2 packages of R language install in Ubuntu server
R ggplot2 Ubuntu server
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 140
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0
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39k
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Comment: C: Errors about ggplot2 packages of R language install in Ubuntu server
updated 6.3 years ago by 44k • written 10.2 years ago by ▴ 140
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0
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39k
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Comment: C: Errors about ggplot2 packages of R language install in Ubuntu server
updated 6.3 years ago by 44k • written 10.2 years ago by ▴ 140
1
vote
3
replies
4.1k
views
Too many sequences of EVM output
genome EVM
updated 6.8 years ago by 8.7k • written 9.0 years ago by ▴ 140
1
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2
replies
2.5k
views
Script convert ltr_finder output file to fasta format
script ltr_finder fasta
updated 7.0 years ago by ▴ 90 • written 9.0 years ago by ▴ 140
0
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0
replies
1.5k
views
How to get rapidly evolution go categories through binomial probability
evolution; GO annotation binomial probability
updated 7.2 years ago by 20 • written 7.8 years ago by ▴ 140
2
votes
1
reply
1.4k
views
How to use molecular docking to verify positive selection site
Molecular Docking Positive Selection Site
updated 7.3 years ago by ▴ 190 • written 7.3 years ago by ▴ 140
2
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0
replies
5.4k
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Answer: A: Access data from very big vcf files in R
7.3 years ago by Ginsea Chen ▴ 140
0
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0
replies
1.0k
views
How to extract primates tree model and placental mammal model from vertebrate model in phyloP46way
phyloP46way
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 140
0
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0
replies
2.0k
views
Repeat Position in TGP phase3 database vcf file
TGP phase3 vcf 1000 genomes
7.6 years ago by Ginsea Chen ▴ 140
0
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1
reply
1.9k
views
Some problems about tobacco genome
tobacco genome;
updated 7.8 years ago by 20 • written 9.2 years ago by ▴ 140
0
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0
replies
4.0k
views
Answer: A: NCBI-SRA File Downloader
7.8 years ago by Ginsea Chen ▴ 140
0
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1
reply
2.0k
views
How to transfer non numeric enrichment factor to numeric in RDA analysis
16srDNA RDA enrichment factor
8.0 years ago by Ginsea Chen ▴ 140
0
votes
1
reply
1.9k
views
Inconsistent among simpson index curve and shannon index curve in alpha diversity analysis using QIIME
shannon index simpson index alpha diversity QIIME
updated 8.0 years ago by 5.9k • written 8.0 years ago by ▴ 140
0
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1
reply
2.6k
views
Error about pbtranscript-tofu installation
pbtranscript-tofu pacbio installation python
updated 8.5 years ago by 44k • written 8.5 years ago by ▴ 140
0
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0
replies
1.6k
views
How to get the sources of genes in genome annotation
genome annotation
8.7 years ago by Ginsea Chen ▴ 140
0
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1
reply
2.5k
views
Repeat regions were contained in cds file (extracted from evm.out.gff3 by using Perl script)
EVM CDS genome Repeats
updated 8.9 years ago by ★ 1.2k • written 9.0 years ago by ▴ 140
1
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2
replies
5.9k
views
Error about rsem-prepare-reference
rsem RNA-Seq
updated 4.9 years ago by 44k • written 10.4 years ago by ▴ 140
0
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0
replies
3.4k
views
Comment: C: Errors about exonerate gff2 file to EVM gff3 converting
9.0 years ago by Ginsea Chen ▴ 140
0
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2
replies
3.4k
views
Errors about exonerate gff2 file to EVM gff3 converting
EVM genome-annotation exonerate
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 140
0
votes
0
replies
2.1k
views
I want to annotate special regions (which were hit region of a gene family sequences) of genome
genome gene-family annotation
updated 2.3 years ago by 44k • written 9.0 years ago by ▴ 140
0
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0
replies
2.8k
views
Comment: C: How to remove transcripts that have poor alignment scores in exonerate analysis
9.0 years ago by Ginsea Chen ▴ 140
1
vote
3
replies
2.8k
views
How to remove transcripts that have poor alignment scores in exonerate analysis
genome alignment
updated 9.0 years ago by 55k • written 9.0 years ago by ▴ 140
2
votes
2
replies
8.2k
views
How to filter out special sequences from a fasta file based on sequence IDs txt
fasta
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 140
0
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0
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4.4k
views
Answer: A: De Novo Transcriptome Assembly of multiple tissues: To pool or not to pool, that
9.3 years ago by Ginsea Chen ▴ 140
0
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2
replies
2.1k
views
Low DE gene numbers after Trinity analysis
RNA-Seq DGE Trinity
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 140
1
vote
1
reply
2.2k
views
Sequences number of Orthomcl results (groups.txt) were lower than raw data (fasta file)
Orthomcl
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 140
0
votes
0
replies
2.2k
views
num_threads option of blast+ was unusable after rmblastn installation
blast rmblast
9.3 years ago by Ginsea Chen ▴ 140
0
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0
replies
4.8k
views
Answer: Answer: Alternatives to Tophat and Trinity for calculating differentially expressed gene
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 140
0
votes
6
replies
3.9k
views
Small accepted-hits.bam file and all FPKM values is error
FPKM tophat RNA-Seq
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 140
0
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0
replies
1.6k
views
special region annotation of plant genome
genome Annotation
9.8 years ago by Ginsea Chen ▴ 140
0
votes
1
reply
5.8k
views
Comment: Comment: Some problems about NCBI data downloading using Aspera
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 140
0
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1
reply
5.8k
views
Comment: Comment: Some problems about NCBI data downloading using Aspera
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 140
0
votes
5
replies
5.8k
views
Some problems about NCBI data downloading using Aspera
NCBI scp aspera
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 140
0
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0
replies
3.1k
views
Answer: Answer: Orthomclloadblast-----Orthomcl Problems
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 140
0
votes
0
replies
9.2k
views
Comment: C: Orthomcl Incompatibility With Mysql5.5.20
10.0 years ago by Ginsea Chen ▴ 140
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