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0
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465
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Comment: Comment: install of genomestudio 2.0.5 in aws
10 months ago by bioguy24 ▴ 230
1
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2
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465
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install of genomestudio 2.0.5 in aws
illumina
10 months ago by bioguy24 ▴ 230
0
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0
replies
1.1k
views
Comment: Comment: csv to custom manifest file
18 months ago by bioguy24 ▴ 230
0
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4
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1.1k
views
csv to custom manifest file
illumina
18 months ago by bioguy24 ▴ 230
0
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0
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776
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Comment: Comment: convert illumina manifest to csv
19 months ago by bioguy24 ▴ 230
1
vote
2
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776
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convert illumina manifest to csv
illumina
updated 19 months ago by 13k • written 19 months ago by ▴ 230
8
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6
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3.2k
views
bwa 0.7.18 download to fix compile fail with GCC 10
bwa
updated 7 months ago by 3.1k • written 2.6 years ago by ▴ 230
0
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1
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3.2k
views
Comment: Comment: bwa 0.7.18 download to fix compile fail with GCC 10
2.6 years ago by bioguy24 ▴ 230
6
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15
replies
2.9k
views
processing in strelka2 with multiples bam file in directory
strelka2
updated 2.9 years ago by ▴ 70 • written 4.9 years ago by ▴ 230
0
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1
reply
2.5k
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STAR-Fusion error while executing and produces some intermediates files
Star-fusion
updated 3.9 years ago by 88k • written 5.5 years ago by ▴ 230
1
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0
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16k
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Answer: A: vcf to bam
updated 4.2 years ago by 44k • written 9.1 years ago by ▴ 230
1
vote
1
reply
1.5k
views
Haplotypecaller indel realignment
haplotypecaller
4.9 years ago by bioguy24 ▴ 230
0
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0
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1000
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Comment: C: sugesstions to optimize an abra2 command
4.9 years ago by bioguy24 ▴ 230
1
vote
2
replies
1000
views
sugesstions to optimize an abra2 command
abra2
4.9 years ago by bioguy24 ▴ 230
0
votes
0
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621
views
q30 using multicovergebam greater the target length
multibam coverage
updated 4.9 years ago by 20 • written 5.0 years ago by ▴ 230
0
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1
reply
3.9k
views
Comment: C: How can I compare two columns of a two VCF files
updated 4.9 years ago by 44k • written 8.9 years ago by ▴ 230
0
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1
reply
2.9k
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Comment: C: processing in strelka2 with multiples bam file in directory
4.9 years ago by bioguy24 ▴ 230
0
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1
reply
2.9k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.9 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.9k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.9 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.9k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.9 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.9k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.9 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.9k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.9 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.9k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.9 years ago by bioguy24 ▴ 230
0
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0
replies
3.7k
views
Comment: C: Need recommendation for a virtual machine or linux cluster for ngs analysis
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 230
0
votes
0
replies
843
views
calculate per base depth and q30 reads from bam using a bed
samtools depth and q30
5.0 years ago by bioguy24 ▴ 230
0
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0
replies
3.0k
views
Comment: A: picard tools error in strand field
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 230
0
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0
replies
3.0k
views
Comment: C: picard tools error in strand field
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 230
2
votes
2
replies
4.2k
views
bedtools 2.25 vs bedtools2.20 coverageBed output not consistent
ngs bedtools
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 230
0
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1
reply
5.5k
views
Comment: C: bowtie2 install on ubuntu
updated 5.0 years ago by 44k • written 9.3 years ago by ▴ 230
0
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1
reply
5.5k
views
Comment: Comment: bowtie2 install on ubuntu
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 230
0
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0
replies
862
views
Comment: C: prepare file for depth of coverage
5.3 years ago by bioguy24 ▴ 230
1
vote
2
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862
views
prepare file for depth of coverage
depth of coverage
5.3 years ago by bioguy24 ▴ 230
0
votes
2
replies
2.3k
views
targets in a bed at or above a coverage
bed bam
updated 20 months ago by 44k • written 5.4 years ago by ▴ 230
0
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0
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1.2k
views
Comment: C: report every base in a bam using bed as input
5.5 years ago by bioguy24 ▴ 230
3
votes
2
replies
1.2k
views
report every base in a bam using bed as input
samtools bcftools
updated 5.5 years ago by 164k • written 5.5 years ago by ▴ 230
1
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0
replies
1.6k
views
Answer: A: compare two columns of two files
5.6 years ago by bioguy24 ▴ 230
0
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0
replies
2.1k
views
Comment: C: correct mark duplicated error using python and pysam to filter out secondary ali
5.6 years ago by bioguy24 ▴ 230
0
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0
replies
7.0k
views
Answer: A: Extract gene names from annotated vcf file
5.6 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.1k
views
correct mark duplicated error using python and pysam to filter out secondary alignments
python pysam
5.6 years ago by bioguy24 ▴ 230
3
votes
4
replies
2.7k
views
error using bqsr and incompatible contigs
gatk bqsr
updated 5.9 years ago by 20 • written 6.3 years ago by ▴ 230
5
votes
4
replies
5.9k
views
samtools covert to bam, sort and index all gz.sam
samtools parellel
updated 5.9 years ago by ★ 4.0k • written 5.9 years ago by ▴ 230
1
vote
2
replies
3.0k
views
using vcftools to add gene name to vcf file
vcftools
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 230
1
vote
2
replies
3.1k
views
add gene name from bed file to vcf in vcftools
vcftools
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 230
0
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0
replies
3.0k
views
Comment: C: using vcftools to add gene name to vcf file
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 230
0
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0
replies
3.1k
views
Comment: Comment: add gene name from bed file to vcf in vcftools
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 230
0
votes
0
replies
2.4k
views
Comment: C: gatk vqsr --recal-file error
6.3 years ago by bioguy24 ▴ 230
2
votes
2
replies
2.4k
views
gatk vqsr --recal-file error
gatk vqsr
updated 6.3 years ago by 5.8k • written 6.3 years ago by ▴ 230
0
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0
replies
2.7k
views
Comment: C: error using bqsr and incompatible contigs
6.3 years ago by bioguy24 ▴ 230
0
votes
0
replies
3.9k
views
Comment: C: GATK MarkDuplicates output and bam
6.3 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.9k
views
Comment: C: GATK MarkDuplicates output and bam
6.3 years ago by bioguy24 ▴ 230
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