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0
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0
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613
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Comment: Comment: install of genomestudio 2.0.5 in aws
17 months ago by bioguy24 ▴ 230
1
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2
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613
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install of genomestudio 2.0.5 in aws
illumina
17 months ago by bioguy24 ▴ 230
0
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0
replies
1.4k
views
Comment: Comment: csv to custom manifest file
2.1 years ago by bioguy24 ▴ 230
0
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4
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1.4k
views
csv to custom manifest file
illumina
2.1 years ago by bioguy24 ▴ 230
0
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0
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951
views
Comment: Comment: convert illumina manifest to csv
2.2 years ago by bioguy24 ▴ 230
1
vote
2
replies
951
views
convert illumina manifest to csv
illumina
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 230
8
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6
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4.0k
views
bwa 0.7.18 download to fix compile fail with GCC 10
bwa
updated 14 months ago by 3.1k • written 3.1 years ago by ▴ 230
0
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1
reply
4.0k
views
Comment: Comment: bwa 0.7.18 download to fix compile fail with GCC 10
3.1 years ago by bioguy24 ▴ 230
6
votes
15
replies
3.5k
views
processing in strelka2 with multiples bam file in directory
strelka2
updated 3.4 years ago by ▴ 70 • written 5.5 years ago by ▴ 230
0
votes
1
reply
2.8k
views
STAR-Fusion error while executing and produces some intermediates files
Star-fusion
updated 4.4 years ago by 89k • written 6.0 years ago by ▴ 230
1
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0
replies
18k
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Answer: A: vcf to bam
updated 4.7 years ago by 45k • written 9.7 years ago by ▴ 230
1
vote
1
reply
1.6k
views
Haplotypecaller indel realignment
haplotypecaller
5.4 years ago by bioguy24 ▴ 230
0
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0
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1.1k
views
Comment: C: sugesstions to optimize an abra2 command
5.4 years ago by bioguy24 ▴ 230
1
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2
replies
1.1k
views
sugesstions to optimize an abra2 command
abra2
5.4 years ago by bioguy24 ▴ 230
0
votes
0
replies
715
views
q30 using multicovergebam greater the target length
multibam coverage
updated 5.5 years ago by 20 • written 5.6 years ago by ▴ 230
0
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1
reply
4.4k
views
Comment: C: How can I compare two columns of a two VCF files
updated 5.5 years ago by 45k • written 9.4 years ago by ▴ 230
0
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1
reply
3.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
5.5 years ago by bioguy24 ▴ 230
0
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1
reply
3.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
5.5 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
5.5 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
5.5 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
5.5 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
5.5 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
5.5 years ago by bioguy24 ▴ 230
0
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0
replies
4.1k
views
Comment: C: Need recommendation for a virtual machine or linux cluster for ngs analysis
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 230
0
votes
0
replies
917
views
calculate per base depth and q30 reads from bam using a bed
samtools depth and q30
5.6 years ago by bioguy24 ▴ 230
0
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0
replies
3.2k
views
Comment: A: picard tools error in strand field
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 230
0
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0
replies
3.2k
views
Comment: C: picard tools error in strand field
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 230
2
votes
2
replies
4.3k
views
bedtools 2.25 vs bedtools2.20 coverageBed output not consistent
ngs bedtools
updated 2.8 years ago by 45k • written 9.7 years ago by ▴ 230
0
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1
reply
5.8k
views
Comment: C: bowtie2 install on ubuntu
updated 5.6 years ago by 45k • written 9.9 years ago by ▴ 230
0
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1
reply
5.8k
views
Comment: Comment: bowtie2 install on ubuntu
updated 2.7 years ago by 45k • written 9.9 years ago by ▴ 230
0
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0
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994
views
Comment: C: prepare file for depth of coverage
5.8 years ago by bioguy24 ▴ 230
1
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2
replies
994
views
prepare file for depth of coverage
depth of coverage
5.8 years ago by bioguy24 ▴ 230
0
votes
2
replies
2.5k
views
targets in a bed at or above a coverage
bed bam
updated 2.2 years ago by 45k • written 6.0 years ago by ▴ 230
0
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0
replies
1.4k
views
Comment: C: report every base in a bam using bed as input
6.1 years ago by bioguy24 ▴ 230
3
votes
2
replies
1.4k
views
report every base in a bam using bed as input
samtools bcftools
updated 6.1 years ago by 166k • written 6.1 years ago by ▴ 230
1
vote
0
replies
2.0k
views
Answer: A: compare two columns of two files
6.2 years ago by bioguy24 ▴ 230
0
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0
replies
2.2k
views
Comment: C: correct mark duplicated error using python and pysam to filter out secondary ali
6.2 years ago by bioguy24 ▴ 230
0
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0
replies
7.4k
views
Answer: A: Extract gene names from annotated vcf file
6.2 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.2k
views
correct mark duplicated error using python and pysam to filter out secondary alignments
python pysam
6.2 years ago by bioguy24 ▴ 230
3
votes
4
replies
3.0k
views
error using bqsr and incompatible contigs
gatk bqsr
updated 6.4 years ago by 20 • written 6.9 years ago by ▴ 230
5
votes
4
replies
6.3k
views
samtools covert to bam, sort and index all gz.sam
samtools parellel
updated 6.4 years ago by ★ 4.2k • written 6.4 years ago by ▴ 230
1
vote
2
replies
3.2k
views
using vcftools to add gene name to vcf file
vcftools
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 230
1
vote
2
replies
3.3k
views
add gene name from bed file to vcf in vcftools
vcftools
updated 2.9 years ago by 45k • written 9.3 years ago by ▴ 230
0
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0
replies
3.2k
views
Comment: C: using vcftools to add gene name to vcf file
updated 6.8 years ago by 45k • written 9.3 years ago by ▴ 230
0
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0
replies
3.3k
views
Comment: Comment: add gene name from bed file to vcf in vcftools
updated 2.9 years ago by 45k • written 9.3 years ago by ▴ 230
0
votes
0
replies
2.7k
views
Comment: C: gatk vqsr --recal-file error
6.8 years ago by bioguy24 ▴ 230
2
votes
2
replies
2.7k
views
gatk vqsr --recal-file error
gatk vqsr
updated 6.8 years ago by 5.8k • written 6.8 years ago by ▴ 230
0
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0
replies
3.0k
views
Comment: C: error using bqsr and incompatible contigs
6.9 years ago by bioguy24 ▴ 230
0
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0
replies
4.4k
views
Comment: C: GATK MarkDuplicates output and bam
6.9 years ago by bioguy24 ▴ 230
0
votes
1
reply
4.4k
views
Comment: C: GATK MarkDuplicates output and bam
6.9 years ago by bioguy24 ▴ 230
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