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How to install BioNano Access tool to visualize Bionano optical map outputs?
bionano genome optical-map
updated 4 months ago by 44k • written 4 months ago by • 0
0
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0
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228
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How are .cmap files generated using Bionano?
bionano map genome assemblies
4 months ago by BioinfoBee • 0
4
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2
replies
2.5k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF SAM BAM GFF minimap2
updated 7 months ago by ▴ 130 • written 19 months ago by • 0
0
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0
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241
views
How to identify structural variants (SV) breakpoints using alignment PAF file?
SV minimap2 genome alignment
10 months ago by BioinfoBee • 0
9
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5
replies
2.1k
views
How to convert hard-masked genome to soft-masked?
repeatmasking repeats
updated 12 months ago by ▴ 130 • written 20 months ago by • 0
0
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1
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1.3k
views
Comment: Comment: How to check RNAseq support for annotated genes?
13 months ago by BioinfoBee • 0
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0
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1.3k
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Comment: Comment: How to check RNAseq support for annotated genes?
14 months ago by BioinfoBee • 0
0
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1
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1.3k
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Comment: Comment: How to check RNAseq support for annotated genes?
14 months ago by BioinfoBee • 0
3
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7
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1.3k
views
How to check RNAseq support for annotated genes?
gene RNA-seq annotation
updated 13 months ago by 55k • written 14 months ago by • 0
0
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1
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1.3k
views
Comment: Comment: How to best represent three biological replicates of single tissue sample?
15 months ago by BioinfoBee • 0
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1
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1.3k
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Comment: Comment: How to best represent three biological replicates of single tissue sample?
15 months ago by BioinfoBee • 0
3
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5
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1.3k
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How to best represent three biological replicates of single tissue sample?
biological-replicates RNA-Seq
updated 15 months ago by 10k • written 16 months ago by • 0
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0
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1.7k
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Comment: Comment: How to filter gene counts by keeping genes that have a count of of 10 or more in
16 months ago by BioinfoBee • 0
0
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1
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1.7k
views
Comment: Comment: How to filter gene counts by keeps genes that have a gene count of of 10 or more
16 months ago by BioinfoBee • 0
3
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5
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1.7k
views
How to filter gene counts by keeping genes that have a count of of 10 or more in at least three samples
filtering counts gene RNA-Seq
16 months ago by BioinfoBee • 0
0
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0
replies
409
views
How to generate heat_map plot from tspex?
tissue-specificity txpex
updated 17 months ago by 147k • written 17 months ago by • 0
4
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7
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1.3k
views
How to sort gff3 according to chromosome order?
gff3 sort
updated 17 months ago by 164k • written 17 months ago by • 0
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2
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1.3k
views
Comment: Comment: How to sort gff3 according to chromosome order?
17 months ago by BioinfoBee • 0
0
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1
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1.3k
views
Comment: Comment: How to sort gff3 according to chromosome order?
17 months ago by BioinfoBee • 0
0
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0
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2.2k
views
Comment: Comment: How to extract summary statistics from GFF3 /GTF file?
18 months ago by BioinfoBee • 0
3
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9
replies
2.2k
views
How to extract summary statistics from GFF3 /GTF file?
gff3 gene-annotation summary-statistics
updated 18 months ago by 8.9k • written 18 months ago by • 0
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0
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758
views
Comment: Comment: How to retain proteins with both start and stop codons, and remove those with in
19 months ago by BioinfoBee • 0
1
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2
replies
758
views
How to retain proteins with both start and stop codons, and remove those with internal stop codons from FASTA file ?
gene annotation
19 months ago by BioinfoBee • 0
8
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10
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2.1k
views
How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
gtf braker2 gff3 tsebra
updated 16 months ago by 44k • written 19 months ago by • 0
0
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0
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2.1k
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Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
19 months ago by BioinfoBee • 0
0
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0
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2.1k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
19 months ago by BioinfoBee • 0
0
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2
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2.1k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
19 months ago by BioinfoBee • 0
0
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1
reply
2.1k
views
Comment: Comment: How to convert GTF output of TSEBRA to gff3 file as an input for EVM ?
19 months ago by BioinfoBee • 0
0
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0
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1.4k
views
Comment: Comment: How to generate GFF/GTF file from cDNA transcipts FASTA file?
19 months ago by BioinfoBee • 0
0
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1
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1.4k
views
Comment: Comment: How to generate GFF/GTF file from cDNA transcipts FASTA file?
19 months ago by BioinfoBee • 0
0
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1
reply
9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
20 months ago by BioinfoBee • 0
4
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5
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1.4k
views
How to generate GFF/GTF file from cDNA transcipts FASTA file?
gff3 gtf transcript cDNA
19 months ago by BioinfoBee • 0
0
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1
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9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
20 months ago by BioinfoBee • 0
0
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1
reply
9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
20 months ago by BioinfoBee • 0
0
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1
reply
9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
20 months ago by BioinfoBee • 0
0
votes
1
reply
9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
20 months ago by BioinfoBee • 0
0
votes
1
reply
2.1k
views
Comment: Comment: How to convert hard-masked genome to soft-masked?
20 months ago by BioinfoBee • 0
0
votes
1
reply
1.7k
views
Comment: Comment: Repeat masking for genome annotation
21 months ago by BioinfoBee • 0
0
votes
0
replies
459
views
How to merge TransDecoder gff3 with BRAKER gff3?
BRAKER Transdecoder gene-annotation gff3 genome
20 months ago by BioinfoBee • 0
0
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1
reply
1.7k
views
Comment: Comment: Repeat masking for genome annotation
21 months ago by BioinfoBee • 0
0
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1
reply
9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
21 months ago by BioinfoBee • 0
0
votes
1
reply
9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
21 months ago by BioinfoBee • 0
0
votes
1
reply
9.6k
views
Comment: Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
21 months ago by BioinfoBee • 0
0
votes
2
replies
4.6k
views
Comment: Comment: Sort gff3 on chromosome, position and then featuretype (gene, mRNA, exon, CDS)
21 months ago by BioinfoBee • 0
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