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Comment: C: How to interpret reference homozygous genotype in the VCF file generated by GATK
updated 6.0 years ago by 45k • written 10.8 years ago by ▴ 40
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8
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14k
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Samtools: removing PCR duplicates
next-gen
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
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0
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14k
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Comment: Comment: Genotype Likelihood Calculation In Samtools Is Wrong?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 40
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0
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3.2k
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Comment: Comment: Quality of whole genome sequencing and whole exome sequencing
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 40
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1
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3.2k
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Comment: Comment: Quality of whole genome sequencing and whole exome sequencing
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 40
2
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5
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3.2k
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Quality of whole genome sequencing and whole exome sequencing
next-gen
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 40
0
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0
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2.2k
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Comment: Comment: Can GATK work directly on read and quality score data
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 40
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2
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2.2k
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Can GATK work directly on read and quality score data
next-gen
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 40
2
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4
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4.6k
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How to interpret reference homozygous genotype in the VCF file generated by GATK
next-gen
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 40
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1
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9.1k
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Comment: C: Extracting reads with low mapping score from Bam file
10.9 years ago by devinliao0918 ▴ 40
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0
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9.1k
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Comment: Comment: Extracting reads with low mapping score from Bam file
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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1
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9.1k
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Comment: Comment: Extracting reads with low mapping score from Bam file
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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1
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9.1k
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Comment: Comment: Extracting reads with low mapping score from Bam file
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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1
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14k
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Comment: C: Samtools: removing PCR duplicates
10.9 years ago by devinliao0918 ▴ 40
0
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1
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14k
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Comment: C: Samtools: removing PCR duplicates
10.9 years ago by devinliao0918 ▴ 40
0
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1
reply
14k
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Comment: C: Samtools: removing PCR duplicates
10.9 years ago by devinliao0918 ▴ 40
6
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3
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7.3k
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How to use Samtools to remove reads whose mate does not map as expected
next-gen
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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0
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5.8k
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Comment: Comment: Samtools: remove reads that are masked as duplicates
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
1
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4
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2.5k
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Samtools: remove reads whose mate does not map as expected
next-gen
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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1
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2.5k
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Comment: C: Samtools: remove reads whose mate does not map as expected
10.9 years ago by devinliao0918 ▴ 40
0
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0
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5.8k
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Comment: C: Samtools: remove reads that are masked as duplicates
10.9 years ago by devinliao0918 ▴ 40
0
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1
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5.8k
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Comment: Comment: Samtools: remove reads that are masked as duplicates
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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7
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5.8k
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Samtools: remove reads that are masked as duplicates
next-gen
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
votes
2
replies
2.9k
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Puzzle on size of Bam file
next-gen
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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0
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7.3k
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Comment: C: How to use Samtools to remove reads whose mate does not map as expected
10.9 years ago by devinliao0918 ▴ 40
0
votes
0
replies
9.1k
views
Comment: C: Extracting reads with low mapping score from Bam file
10.9 years ago by devinliao0918 ▴ 40
0
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1
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9.1k
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Comment: C: Extracting reads with low mapping score from Bam file
10.9 years ago by devinliao0918 ▴ 40
0
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0
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9.1k
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Comment: C: Extracting reads with low mapping score from Bam file
10.9 years ago by devinliao0918 ▴ 40
0
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0
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9.1k
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Comment: C: Extracting reads with low mapping score from Bam file
10.9 years ago by devinliao0918 ▴ 40
0
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1
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9.1k
views
Comment: C: Extracting reads with low mapping score from Bam file
10.9 years ago by devinliao0918 ▴ 40
0
votes
1
reply
9.1k
views
Comment: Comment: Extracting reads with low mapping score from Bam file
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
7
votes
19
replies
9.1k
views
Extracting reads with low mapping score from Bam file
next-gen
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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1
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1.9k
views
Comment: Comment: Mapping score in pileup file generated from Samtools
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
1
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3
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1.9k
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Mapping score in pileup file generated from Samtools
next-gen
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 40
0
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0
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5.0k
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Comment: Comment: Some Help Understanding With Mpileup Output
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 40
0
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0
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5.0k
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Answer: Answer: Some Help Understanding With Mpileup Output
updated 3.6 years ago by 45k • written 11.0 years ago by ▴ 40
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