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Comment: Comment: Creating custom GTF file for use with Cellranger with barcode sequences
16 months ago by stefano.iantorno ▴ 70
4
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3
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1.0k
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Creating custom GTF file for use with Cellranger with barcode sequences
Cellranger
16 months ago by stefano.iantorno ▴ 70
17
votes
3
replies
15k
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Subsetting Granges based on its metadata
genome R
updated 3.1 years ago by 44k • written 10.5 years ago by ▴ 70
1
vote
3
replies
5.6k
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PED file format for use with GATK PhaseByTransmission
GATK SNP next-gen-sequencing
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 70
2
votes
5
replies
3.6k
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Running bcftools on vcf files
sequencing SNP
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 70
3
votes
2
replies
4.7k
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using GATK UnifiedGenotyper on a single chromosome
genome java gatk
updated 3.1 years ago by 44k • written 10.4 years ago by ▴ 70
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0
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3.6k
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Comment: C: Running bcftools on vcf files
9.9 years ago by stefano.iantorno ▴ 70
0
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1
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3.6k
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Comment: C: Running bcftools on vcf files
9.9 years ago by stefano.iantorno ▴ 70
0
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0
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3.6k
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Comment: Comment: Running bcftools on vcf files
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 70
0
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0
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2.1k
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Comment: Comment: Variant calling with Freebayes gives M as a reference nucleotide call
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 70
2
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2
replies
2.1k
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Variant calling with Freebayes gives M as a reference nucleotide call
variant snp next-gen-sequencing freebayes
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 70
0
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0
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6.8k
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Comment: C: Phasing variants called from FreeBayes
10.3 years ago by stefano.iantorno ▴ 70
0
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1
reply
6.8k
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Comment: C: Phasing variants called from FreeBayes
10.3 years ago by stefano.iantorno ▴ 70
0
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1
reply
6.8k
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Comment: C: Phasing variants called from FreeBayes
10.3 years ago by stefano.iantorno ▴ 70
0
votes
5
replies
6.8k
views
Phasing variants called from FreeBayes
SNP genome sequence
updated 3.0 years ago by 44k • written 10.3 years ago by ▴ 70
0
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0
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15k
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Comment: C: Subsetting Granges based on its metadata
10.5 years ago by stefano.iantorno ▴ 70
1
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0
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8.6k
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Comment: C: Running GATK DepthOfCoverage on BAM files with multiple RG's
10.5 years ago by stefano.iantorno ▴ 70
0
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0
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8.6k
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Comment: C: Running GATK DepthOfCoverage on BAM files with multiple RG's
10.5 years ago by stefano.iantorno ▴ 70
3
votes
3
replies
8.6k
views
Running GATK DepthOfCoverage on BAM files with multiple RG's
next-gen sequence software error
updated 10.5 years ago by 164k • written 10.5 years ago by ▴ 70
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