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1
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0
replies
3.6k
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Comment: C: How to perform the lncRNA enrichment analysis?
3.7 years ago by a.james ▴ 240
0
votes
0
replies
3.3k
views
Comment: C: List of TCGA genes differentially expressed in normal versus tumor
3.8 years ago by a.james ▴ 240
0
votes
0
replies
1.0k
views
How to get the refSNP ids or rsIDs of variants from UKbiobank datasets
SNP sequencing genome next-gen
4.2 years ago by a.james ▴ 240
0
votes
0
replies
2.2k
views
Comment: C: Download the promoter, enchancer, TSS , 3 prime, exon and intron positions of al
4.3 years ago by a.james ▴ 240
3
votes
4
replies
2.2k
views
Download the promoter, enchancer, TSS , 3 prime, exon and intron positions of all hg38 genes
RNA-Seq DNA-seq
updated 19 months ago by ▴ 760 • written 4.3 years ago by ▴ 240
3
votes
1
reply
561
views
how to extact first 100 lines of an indexed BED file
bed genome
4.6 years ago by a.james ▴ 240
0
votes
0
replies
735
views
How to annotate illumina HumanHT-12_V3_0_R3_11283641_A.txt data
genome illumina array
4.6 years ago by a.james ▴ 240
0
votes
0
replies
1.2k
views
Comment: C: Tools for predicting the protein altering effects of the variants from EXON-seq
4.8 years ago by a.james ▴ 240
0
votes
2
replies
1.2k
views
Tools for predicting the protein altering effects of the variants from EXON-seq data
Exon-seq variants SNP sequencing
4.8 years ago by a.james ▴ 240
0
votes
1
reply
7.0k
views
Comment: C: IGV not showing the variants detected by GATK and Varscan
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 240
2
votes
1
reply
805
views
Finding the coverage of variants from variant file, which has no DF4 field
assembly RNA-Seq
5.0 years ago by a.james ▴ 240
0
votes
1
reply
1.9k
views
Comment: C: The Picard FilterSAM READ is throwing error
5.0 years ago by a.james ▴ 240
1
vote
3
replies
1.9k
views
The Picard FilterSAM READ is throwing error
RNA-Seq picard Assembly reads
updated 5.0 years ago by 164k • written 5.0 years ago by ▴ 240
0
votes
1
reply
1.2k
views
Comment: C: Finding the best alignment from a paternal and maternal BAM file
5.0 years ago by a.james ▴ 240
2
votes
3
replies
1.2k
views
Finding the best alignment from a paternal and maternal BAM file
RNA-Seq
updated 5.0 years ago by 8.9k • written 5.0 years ago by ▴ 240
1
vote
0
replies
3.8k
views
Comment: C: co-mutation plot from vcf file
updated 5.0 years ago by 44k • written 9.2 years ago by ▴ 240
0
votes
0
replies
1.4k
views
Comment: C: Extracting the reads counts (coverage) a specific variant allele from a Fastq fi
5.1 years ago by a.james ▴ 240
0
votes
1
reply
1.4k
views
Comment: C: Extracting the reads counts (coverage) a specific variant allele from a Fastq fi
5.1 years ago by a.james ▴ 240
2
votes
4
replies
1.4k
views
Extracting the reads counts (coverage) a specific variant allele from a Fastq file
RNA-Seq snp sequencing
5.1 years ago by a.james ▴ 240
0
votes
1
reply
3.0k
views
Comment: C: How to retrieve metadata from the manifest data and UUID from genomic data commo
5.4 years ago by a.james ▴ 240
1
vote
1
reply
18k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
5.4 years ago by a.james ▴ 240
0
votes
1
reply
18k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
5.4 years ago by a.james ▴ 240
0
votes
1
reply
18k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
5.4 years ago by a.james ▴ 240
0
votes
1
reply
18k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
5.4 years ago by a.james ▴ 240
0
votes
1
reply
18k
views
Comment: C: Sample names for TCGA data from GDC-legacy archive
5.4 years ago by a.james ▴ 240
2
votes
4
replies
3.0k
views
How to retrieve metadata from the manifest data and UUID from genomic data commons (GDC)
tcga exon mutations alignment next-gen
5.4 years ago by a.james ▴ 240
0
votes
1
reply
4.0k
views
Comment: C: Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 vers
5.4 years ago by a.james ▴ 240
0
votes
0
replies
4.0k
views
Comment: C: Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 vers
5.4 years ago by a.james ▴ 240
0
votes
1
reply
4.0k
views
Comment: C: Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 vers
5.4 years ago by a.james ▴ 240
3
votes
14
replies
4.0k
views
Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 version
exome next-gen alignment
5.4 years ago by a.james ▴ 240
0
votes
1
reply
4.0k
views
Comment: C: Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 vers
5.4 years ago by a.james ▴ 240
0
votes
1
reply
4.0k
views
Comment: C: Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 vers
5.4 years ago by a.james ▴ 240
0
votes
0
replies
4.0k
views
Comment: C: Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 vers
5.4 years ago by a.james ▴ 240
0
votes
1
reply
4.0k
views
Comment: C: Where can I download GRCh38-lite.fa file and all_sequences.fa file for hg38 vers
5.4 years ago by a.james ▴ 240
3
votes
2
replies
1.2k
views
CWLtools version problem with usage of secondary files and java expression
CWL
5.6 years ago by a.james ▴ 240
2
votes
0
replies
1.2k
views
Answer: A: CWLtools version problem with usage of secondary files and java expression
5.6 years ago by a.james ▴ 240
1
vote
0
replies
1.2k
views
Comment: C: CWLtools version problem with usage of secondary files and java expression
5.6 years ago by a.james ▴ 240
0
votes
0
replies
1.1k
views
How to step dependency in a step based on the output from 2 previous steps in CWL workflow
CW
5.6 years ago by a.james ▴ 240
2
votes
2
replies
2.6k
views
CWL to check the output directory and run for non-existing files
CWL RNA-seq next-gen
5.7 years ago by a.james ▴ 240
0
votes
1
reply
1.9k
views
CWL in toil
CWL Toil
5.7 years ago by a.james ▴ 240
1
vote
0
replies
1.1k
views
Comment: C: CWL for star for multiple bam files with javascript expression
5.8 years ago by a.james ▴ 240
2
votes
2
replies
1.1k
views
CWL for star for multiple bam files with javascript expression
CWL
updated 5.8 years ago by 164k • written 5.8 years ago by ▴ 240
1
vote
0
replies
1.7k
views
Comment: C: CWL to write into for writing lines one from one file to new file
5.8 years ago by a.james ▴ 240
3
votes
4
replies
1.7k
views
CWL to write into for writing lines one from one file to new file
CWL
5.8 years ago by a.james ▴ 240
0
votes
1
reply
1.7k
views
Comment: C: CWL to write into for writing lines one from one file to new file
5.8 years ago by a.james ▴ 240
0
votes
0
replies
1.3k
views
CWL toil-cwl-runner for two samples, could not find a error log and reason for failure
cwl
5.8 years ago by a.james ▴ 240
1
vote
0
replies
2.4k
views
Comment: C: CWL with R returns empty output directory with "Final process status is success"
5.8 years ago by a.james ▴ 240
5
votes
7
replies
2.4k
views
CWL with R returns empty output directory with "Final process status is success" status
CWL RNA-Seq
5.8 years ago by a.james ▴ 240
1
vote
0
replies
2.4k
views
Comment: C: CWL with R returns empty output directory with "Final process status is success"
5.8 years ago by a.james ▴ 240
0
votes
1
reply
2.4k
views
Comment: C: CWL with R returns empty output directory with "Final process status is success"
5.8 years ago by a.james ▴ 240
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