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401
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Comment: Comment: RNA-seq, three comparisons - stick to one linear model, or use separate models?
14 days ago by noodlejackson ▴ 40
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2
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401
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RNA-seq, three comparisons - stick to one linear model, or use separate models?
statistics mixed-effect-model stats RNAseq linear-model
updated 13 days ago by 45k • written 15 days ago by ▴ 40
0
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0
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286
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Comment: Comment: How to make amazing UMAP to spatialPlot GIF
6 weeks ago by noodlejackson ▴ 40
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2
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286
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How to make amazing UMAP to spatialPlot GIF
umap spatial
6 weeks ago by noodlejackson ▴ 40
6
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6
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699
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Multiple factors in DESeq2
deseq2
6 weeks ago by noodlejackson ▴ 40
1
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0
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699
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Answer: Answer: Multiple factors in DESeq2
6 weeks ago by noodlejackson ▴ 40
0
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1
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699
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Comment: Comment: Multiple factors in DESeq2
7 weeks ago by noodlejackson ▴ 40
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0
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699
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Comment: Comment: Multiple factors in DESeq2
7 weeks ago by noodlejackson ▴ 40
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0
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699
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Comment: Comment: Multiple factors in DESeq2
7 weeks ago by noodlejackson ▴ 40
0
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0
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528
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Comment: Comment: Dimensionality reduction using RNA and protein expression
10 weeks ago by noodlejackson ▴ 40
4
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4
replies
528
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Dimensionality reduction using RNA and protein expression
dimensionality-reduction RNA-seq spatial
10 weeks ago by noodlejackson ▴ 40
0
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0
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764
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Comment: Comment: Speed up umap parameter optimisation?
11 weeks ago by noodlejackson ▴ 40
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1
reply
764
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Comment: Comment: Speed up umap parameter optimisation?
11 weeks ago by noodlejackson ▴ 40
3
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7
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764
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Speed up umap parameter optimisation?
rna-seq umap r
updated 11 weeks ago by ★ 18k • written 11 weeks ago by ▴ 40
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0
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764
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Comment: Comment: Speed up umap parameter optimisation?
11 weeks ago by noodlejackson ▴ 40
0
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0
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471
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Comment: Comment: MT and rRNA gene expression in bulk RNA-seq sample QC filtering
3 months ago by noodlejackson ▴ 40
13
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7
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967
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7 follow
Forum: Premade RNA-seq pipeline or custom
rna-seq pipeline
updated 3 months ago by 21k • written 3 months ago by ▴ 40
4
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2
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471
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MT and rRNA gene expression in bulk RNA-seq sample QC filtering
RNA-seq
3 months ago by noodlejackson ▴ 40
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0
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1.1k
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Comment: Comment: Batch correction preserving biological difference
8 months ago by noodlejackson ▴ 40
0
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1
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1.1k
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Comment: Comment: Batch correction preserving biological difference
8 months ago by noodlejackson ▴ 40
4
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6
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1.1k
views
Batch correction preserving biological difference
scRNA-Seq batch-correction
8 months ago by noodlejackson ▴ 40
0
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1
reply
1.1k
views
Comment: Comment: Batch correction preserving biological difference
8 months ago by noodlejackson ▴ 40
2
votes
1
reply
481
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Associations with small-ish patient clinical data with bulk RNA-seq expression
statistics ai rna-seq stats machine-learning
updated 9 months ago by ★ 2.1k • written 9 months ago by ▴ 40
0
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0
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14k
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Comment: Comment: WGCNA soft thresholding problem
14 months ago by noodlejackson ▴ 40
1
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3
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984
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GO, KEGG, GSEA analysis with ~5 DEGs
GO KEGG
updated 16 months ago by 102k • written 16 months ago by ▴ 40
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0
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984
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Comment: Comment: GO, KEGG, GSEA analysis with ~5 DEGs
16 months ago by noodlejackson ▴ 40
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0
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1.5k
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Comment: Comment: RNA-Seq: Comparing Expression between Cancer Grades
18 months ago by noodlejackson ▴ 40
7
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7
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1.5k
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RNA-Seq: Comparing Expression between Cancer Grades
factors rna-seq grades transcriptomics
18 months ago by noodlejackson ▴ 40
1
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0
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1.5k
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Comment: Comment: RNA-Seq: Comparing Expression between Cancer Grades
18 months ago by noodlejackson ▴ 40
0
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2
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1.5k
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Comment: Comment: RNA-Seq: Comparing Expression between Cancer Grades
18 months ago by noodlejackson ▴ 40
0
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0
replies
1.0k
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Comment: Comment: Matched samples in Deseq2
20 months ago by noodlejackson ▴ 40
0
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1
reply
1.0k
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Comment: Comment: Matched samples in Deseq2
20 months ago by noodlejackson ▴ 40
0
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0
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1.2k
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Comment: Comment: Heatmap in R; how to change the order of Row names
updated 20 months ago by 45k • written 20 months ago by ▴ 40
1
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4
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1.0k
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Matched samples in Deseq2
RNA-seq deseq2
20 months ago by noodlejackson ▴ 40
0
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0
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3.1k
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Answer: Answer: How can I make all my PCA plots the same shape using ggplots?
2.0 years ago by noodlejackson ▴ 40
0
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0
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1.5k
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Comment: Comment: No Replicate RNA-Seq (But still biological replicates)
2.0 years ago by noodlejackson ▴ 40
0
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0
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826
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Comment: Comment: Do Benjamini-Hochberg p.adj values get less strict when analysing only one super
2.0 years ago by noodlejackson ▴ 40
1
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2
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826
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Do Benjamini-Hochberg p.adj values get less strict when analysing only one superfamily only? RNA-seq
pvalue p-value rna-seq Benjamini-Hochberg
updated 2.0 years ago by 102k • written 2.0 years ago by ▴ 40
5
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4
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1.5k
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No Replicate RNA-Seq (But still biological replicates)
replicates RNA-Seq
2.0 years ago by noodlejackson ▴ 40
0
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0
replies
863
views
Comment: Comment: Seeking feedback on RNA-seq analysis with low sample size and custom pathways
2.0 years ago by noodlejackson ▴ 40
40 results • Page 1 of 1
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