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2
votes
1
reply
4.2k
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Lmer() for RNA-seq with batch as random effect: how to prepare input?
lmer rna-seq batch mixed model
updated 6.6 years ago by 45k • written 9.1 years ago by ▴ 120
0
votes
8
replies
2.6k
views
Why do RNA-seq reads not map against clones?
trinity rsem clone mapping RNA-Seq
updated 2.8 years ago by 45k • written 9.1 years ago by ▴ 120
0
votes
0
replies
2.6k
views
Comment: C: Why do RNA-seq reads not map against clones?
updated 6.6 years ago by 45k • written 9.1 years ago by ▴ 120
0
votes
1
reply
2.6k
views
Comment: C: Why do RNA-seq reads not map against clones?
updated 6.6 years ago by 45k • written 9.1 years ago by ▴ 120
1
vote
5
replies
3.9k
views
RNA-seq mapper that allows variability and handles multi-mapping?
RNA-Seq mapping
9.0 years ago by Ekarl2 ▴ 120
5
votes
2
replies
4.9k
views
How to handle Trinity post-filtering singletons from paired-end sequencing?
singletons paired-end Trinity
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 120
0
votes
0
replies
2.6k
views
Comment: C: Why do RNA-seq reads not map against clones?
9.1 years ago by Ekarl2 ▴ 120
0
votes
1
reply
2.6k
views
Comment: Comment: Why do RNA-seq reads not map against clones?
updated 2.8 years ago by 45k • written 9.1 years ago by ▴ 120
3
votes
0
replies
3.7k
views
Is the following code appropriate for making a reasonable RNA-seq clustered heat map?
RNA-Seq heatmap scaling
9.2 years ago by Ekarl2 ▴ 120
0
votes
0
replies
3.2k
views
Comment: C: Can FPKM be added?
9.5 years ago by Ekarl2 ▴ 120
12
votes
3
replies
3.2k
views
Can FPKM be added?
FPKM RNA-seq
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 120
0
votes
1
reply
3.2k
views
EdgeR: Correcting for lane effects in addition to replicate batch effects?
edgeR batch-effect lane-effect
updated 2.6 years ago by 45k • written 9.6 years ago by ▴ 120
0
votes
1
reply
2.3k
views
Comment: C: What is the Trinity setting max_pct_stdev?
10.0 years ago by Ekarl2 ▴ 120
3
votes
3
replies
2.3k
views
What is the Trinity setting max_pct_stdev?
trinity RNA-Seq max_pct_stdev
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
0
replies
8.8k
views
Comment: C: RNA-seq, EdgeR and batch effects
10.3 years ago by Ekarl2 ▴ 120
0
votes
0
replies
8.8k
views
Comment: C: RNA-seq, EdgeR and batch effects
10.3 years ago by Ekarl2 ▴ 120
3
votes
6
replies
8.8k
views
RNA-seq, EdgeR and batch effects
RNA-Seq removeBatchEffect edgeR batch-effect
updated 12 months ago by 45k • written 10.3 years ago by ▴ 120
1
vote
1
reply
8.8k
views
Comment: C: RNA-seq, EdgeR and batch effects
10.3 years ago by Ekarl2 ▴ 120
0
votes
0
replies
5.3k
views
Comment: C: Within-sample comparison of TMM normalized values?
10.4 years ago by Ekarl2 ▴ 120
0
votes
1
reply
5.3k
views
Comment: C: Within-sample comparison of TMM normalized values?
10.4 years ago by Ekarl2 ▴ 120
0
votes
1
reply
5.3k
views
Comment: C: Within-sample comparison of TMM normalized values?
10.4 years ago by Ekarl2 ▴ 120
7
votes
6
replies
5.3k
views
Within-sample comparison of TMM normalized values?
within-sample TMM RNA-Seq
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 120
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