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1.3k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
18 days ago by rfran010 ★ 1.3k
0
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1
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699
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Comment: Comment: Question about edgeR p-values/FDR values
23 days ago by rfran010 ★ 1.3k
0
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0
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340
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Comment: Comment: all genes have negative logFC edgeR
5 weeks ago by rfran010 ★ 1.3k
0
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0
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596
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Comment: Comment: Differential gene expression (aiming to create heatmap) for raw RNAseq count dat
3 months ago by rfran010 ★ 1.3k
0
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1
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596
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Comment: Comment: Differential gene expression (aiming to create heatmap) for raw RNAseq count dat
3 months ago by rfran010 ★ 1.3k
1
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1
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478
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Comment: Comment: call peak for all replicates in all conditions using macs2
3 months ago by rfran010 ★ 1.3k
0
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1
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402
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
3 months ago by rfran010 ★ 1.3k
0
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0
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360
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Comment: Comment: flipped BAM files in IGV after STAR aligner
3 months ago by rfran010 ★ 1.3k
0
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0
replies
928
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Comment: Comment: Submitting a job in parallel on slurm
3 months ago by rfran010 ★ 1.3k
0
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1
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928
views
Comment: Comment: Submitting a job in parallel on slurm
3 months ago by rfran010 ★ 1.3k
0
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0
replies
928
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Comment: Comment: Submitting a job in parallel on slurm
3 months ago by rfran010 ★ 1.3k
0
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2
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928
views
Comment: Comment: Submitting a job in parallel on slurm
3 months ago by rfran010 ★ 1.3k
0
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0
replies
928
views
Comment: Comment: Submitting a job in parallel on slurm
3 months ago by rfran010 ★ 1.3k
0
votes
1
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928
views
Comment: Comment: Submitting a job in parallel on slurm
3 months ago by rfran010 ★ 1.3k
0
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1
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307
views
Comment: Comment: Change of cell proportions or differential expression?
3 months ago by rfran010 ★ 1.3k
0
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3
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928
views
Answer: Answer: Submitting a job in parallel on slurm
3 months ago by rfran010 ★ 1.3k
0
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0
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255
views
Answer: Answer: How To Get Millions of Sequences from Genomic Regions Efficiently
3 months ago by rfran010 ★ 1.3k
1
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0
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263
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Answer: Answer: quary relted to ChIPpeakAnno & VennDiagram
3 months ago by rfran010 ★ 1.3k
0
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1
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792
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Comment: Comment: Weird insert size distribution plot
3 months ago by rfran010 ★ 1.3k
0
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1
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566
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Answer: Answer: Should the amount of DNA input used for ChIP-seq library preparation be matched
3 months ago by rfran010 ★ 1.3k
0
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0
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589
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Comment: Comment: featureCounts output
3 months ago by rfran010 ★ 1.3k
1
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1
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535
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Answer: Answer: Merging two sequencing datasets
3 months ago by rfran010 ★ 1.3k
1
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0
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612
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Comment: Comment: How to check if all read names are paired properly in paired end fastq.gz files?
3 months ago by rfran010 ★ 1.3k
0
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1
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389
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Comment: Comment: high no_feature in htseq
4 months ago by rfran010 ★ 1.3k
0
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1
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389
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Comment: Comment: high no_feature in htseq
4 months ago by rfran010 ★ 1.3k
1
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1
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589
views
Comment: Comment: featureCounts output
4 months ago by rfran010 ★ 1.3k
1
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2
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589
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Answer: Answer: featureCounts output
4 months ago by rfran010 ★ 1.3k
0
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0
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428
views
Comment: Comment: Same sample and reference genome, different number of reads
4 months ago by rfran010 ★ 1.3k
1
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1
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428
views
Comment: Comment: Same sample and reference genome, different number of reads
4 months ago by rfran010 ★ 1.3k
0
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0
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356
views
Answer: Answer: Determining library prep: rRNA depletion or mRNA enrichment
4 months ago by rfran010 ★ 1.3k
1
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0
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521
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Comment: Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
4 months ago by rfran010 ★ 1.3k
0
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0
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701
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Comment: Comment: bam is in a format that cannot be usefully indexed
4 months ago by rfran010 ★ 1.3k
0
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0
replies
356
views
Comment: Comment: High Amount of UnAssignedNoFeatures in FeatureCounts Output
4 months ago by rfran010 ★ 1.3k
0
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2
replies
701
views
Answer: Answer: bam is in a format that cannot be usefully indexed
4 months ago by rfran010 ★ 1.3k
0
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1
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454
views
Comment: Comment: Doubt regarding Nanomolar calculation for dsDNA
4 months ago by rfran010 ★ 1.3k
0
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1
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454
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Answer: Answer: Doubt regarding Nanomolar calculation for dsDNA
4 months ago by rfran010 ★ 1.3k
0
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0
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263
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Comment: Comment: computeMatrix on 2 regions with replicates
4 months ago by rfran010 ★ 1.3k
1
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1
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364
views
Answer: Answer: how to perform the GSEA for multi groups
4 months ago by rfran010 ★ 1.3k
0
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1
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927
views
Comment: Comment: Error with plotMDS in R
4 months ago by rfran010 ★ 1.3k
0
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1
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927
views
Comment: Comment: Error with plotMDS in R
4 months ago by rfran010 ★ 1.3k
0
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1
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927
views
Comment: Comment: Error with plotMDS in R
4 months ago by rfran010 ★ 1.3k
0
votes
0
replies
935
views
Comment: Comment: Custom Genome Curation in IGV
4 months ago by rfran010 ★ 1.3k
1
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1
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935
views
Comment: Comment: Custom Genome Curation in IGV
4 months ago by rfran010 ★ 1.3k
1
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0
replies
814
views
Comment: Comment: 10X #3' RNA seq - How is strandedness determined?
4 months ago by rfran010 ★ 1.3k
1
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1
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935
views
Comment: Comment: Custom Genome Curation in IGV
4 months ago by rfran010 ★ 1.3k
1
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1
reply
935
views
Comment: Comment: Custom Genome Curation in IGV
4 months ago by rfran010 ★ 1.3k
0
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1
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935
views
Comment: Comment: Custom Genome Curation in IGV
4 months ago by rfran010 ★ 1.3k
2
votes
1
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935
views
Answer: Answer: Custom Genome Curation in IGV
4 months ago by rfran010 ★ 1.3k
0
votes
1
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927
views
Answer: Answer: Error with plotMDS in R
4 months ago by rfran010 ★ 1.3k
1
vote
1
reply
570
views
Comment: Comment: samtools mpileup include soft-clipped bases
4 months ago by rfran010 ★ 1.3k
244 results • Page 1 of 5
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