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127
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Answer: Answer: Motif enrichment across super-enhancer regions
1 day ago by rfran010 ★ 1.3k
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1
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557
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Comment: Comment: Strange offsetting in deeptools?
4 weeks ago by rfran010 ★ 1.3k
1
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1
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557
views
Answer: Answer: Strange offsetting in deeptools?
4 weeks ago by rfran010 ★ 1.3k
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1
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983
views
Comment: Comment: DESeq2: error in checkFullRank(modelMatrix)
4 weeks ago by rfran010 ★ 1.3k
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0
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340
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Comment: Comment: SCRNA calculate the average expression
4 weeks ago by rfran010 ★ 1.3k
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0
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293
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Comment: Comment: Merge paired end reads after mapping in BAM files
4 weeks ago by rfran010 ★ 1.3k
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0
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213
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Comment: Comment: scRNA-seq analysis after overexpressing a specific gene
4 weeks ago by rfran010 ★ 1.3k
0
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1
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340
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Comment: Comment: SCRNA calculate the average expression
4 weeks ago by rfran010 ★ 1.3k
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1
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1.2k
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Comment: Comment: Mouse genome featureCounts
5 weeks ago by rfran010 ★ 1.3k
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0
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424
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Answer: Answer: WIG files - bulk RNA-seq
5 weeks ago by rfran010 ★ 1.3k
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1
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1.2k
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Comment: Comment: Mouse_genome_featureCounts
5 weeks ago by rfran010 ★ 1.3k
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0
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1.2k
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Comment: Comment: Mouse_genome_featureCounts
5 weeks ago by rfran010 ★ 1.3k
0
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0
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442
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Comment: Comment: RPKM value interpretation
9 weeks ago by rfran010 ★ 1.3k
1
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1
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1.7k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
3 months ago by rfran010 ★ 1.3k
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1
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1.2k
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Comment: Comment: Question about edgeR p-values/FDR values
3 months ago by rfran010 ★ 1.3k
0
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0
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420
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Comment: Comment: all genes have negative logFC edgeR
4 months ago by rfran010 ★ 1.3k
0
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0
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877
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Comment: Comment: Differential gene expression (aiming to create heatmap) for raw RNAseq count dat
6 months ago by rfran010 ★ 1.3k
0
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1
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877
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Comment: Comment: Differential gene expression (aiming to create heatmap) for raw RNAseq count dat
6 months ago by rfran010 ★ 1.3k
1
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1
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702
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Comment: Comment: call peak for all replicates in all conditions using macs2
6 months ago by rfran010 ★ 1.3k
0
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1
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593
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
6 months ago by rfran010 ★ 1.3k
0
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0
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540
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Comment: Comment: flipped BAM files in IGV after STAR aligner
6 months ago by rfran010 ★ 1.3k
0
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0
replies
1.6k
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Comment: Comment: Submitting a job in parallel on slurm
6 months ago by rfran010 ★ 1.3k
0
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1
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1.6k
views
Comment: Comment: Submitting a job in parallel on slurm
6 months ago by rfran010 ★ 1.3k
0
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0
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1.6k
views
Comment: Comment: Submitting a job in parallel on slurm
6 months ago by rfran010 ★ 1.3k
0
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2
replies
1.6k
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Comment: Comment: Submitting a job in parallel on slurm
6 months ago by rfran010 ★ 1.3k
0
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0
replies
1.6k
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Comment: Comment: Submitting a job in parallel on slurm
6 months ago by rfran010 ★ 1.3k
0
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1
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1.6k
views
Comment: Comment: Submitting a job in parallel on slurm
6 months ago by rfran010 ★ 1.3k
0
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1
reply
450
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Comment: Comment: Change of cell proportions or differential expression?
6 months ago by rfran010 ★ 1.3k
0
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3
replies
1.6k
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Answer: Answer: Submitting a job in parallel on slurm
6 months ago by rfran010 ★ 1.3k
0
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0
replies
363
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Answer: Answer: How To Get Millions of Sequences from Genomic Regions Efficiently
6 months ago by rfran010 ★ 1.3k
1
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0
replies
359
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Answer: Answer: quary relted to ChIPpeakAnno & VennDiagram
6 months ago by rfran010 ★ 1.3k
0
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1
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1.2k
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Comment: Comment: Weird insert size distribution plot
6 months ago by rfran010 ★ 1.3k
0
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1
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777
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Answer: Answer: Should the amount of DNA input used for ChIP-seq library preparation be matched
6 months ago by rfran010 ★ 1.3k
0
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0
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922
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Comment: Comment: featureCounts output
6 months ago by rfran010 ★ 1.3k
1
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1
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745
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Answer: Answer: Merging two sequencing datasets
6 months ago by rfran010 ★ 1.3k
1
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0
replies
949
views
Comment: Comment: How to check if all read names are paired properly in paired end fastq.gz files?
6 months ago by rfran010 ★ 1.3k
0
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1
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563
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Comment: Comment: high no_feature in htseq
6 months ago by rfran010 ★ 1.3k
0
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1
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563
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Comment: Comment: high no_feature in htseq
6 months ago by rfran010 ★ 1.3k
1
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1
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922
views
Comment: Comment: featureCounts output
6 months ago by rfran010 ★ 1.3k
1
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2
replies
922
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Answer: Answer: featureCounts output
6 months ago by rfran010 ★ 1.3k
0
votes
0
replies
674
views
Comment: Comment: Same sample and reference genome, different number of reads
6 months ago by rfran010 ★ 1.3k
1
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1
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674
views
Comment: Comment: Same sample and reference genome, different number of reads
6 months ago by rfran010 ★ 1.3k
0
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0
replies
536
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Answer: Answer: Determining library prep: rRNA depletion or mRNA enrichment
7 months ago by rfran010 ★ 1.3k
1
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0
replies
743
views
Comment: Comment: Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
7 months ago by rfran010 ★ 1.3k
0
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0
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1.1k
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Comment: Comment: bam is in a format that cannot be usefully indexed
7 months ago by rfran010 ★ 1.3k
0
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0
replies
489
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Comment: Comment: High Amount of UnAssignedNoFeatures in FeatureCounts Output
7 months ago by rfran010 ★ 1.3k
0
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2
replies
1.1k
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Answer: Answer: bam is in a format that cannot be usefully indexed
7 months ago by rfran010 ★ 1.3k
0
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1
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609
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Comment: Comment: Doubt regarding Nanomolar calculation for dsDNA
7 months ago by rfran010 ★ 1.3k
0
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1
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609
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Answer: Answer: Doubt regarding Nanomolar calculation for dsDNA
7 months ago by rfran010 ★ 1.3k
0
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0
replies
346
views
Comment: Comment: computeMatrix on 2 regions with replicates
7 months ago by rfran010 ★ 1.3k
257 results • Page 1 of 6
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