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Answer: Answer: 10X #3' RNA seq - How is strandedness determined?
4 months ago by rfran010 ★ 1.3k
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575
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Comment: Comment: samtools mpileup include soft clip
4 months ago by rfran010 ★ 1.3k
2
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1
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504
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Comment: Comment: Does single-end short-read sequencing affect the mapping of mitochondrial and ri
4 months ago by rfran010 ★ 1.3k
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1
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741
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Comment: Comment: FASTQC: per base n content fail
4 months ago by rfran010 ★ 1.3k
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1
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447
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Answer: Answer: Hisat2 mapping stringency
4 months ago by rfran010 ★ 1.3k
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1
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707
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Comment: Comment: Extracting unmapped reads from a sam file and converting to fastq
4 months ago by rfran010 ★ 1.3k
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0
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528
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Comment: Comment: IGV - ChIP-Seq
4 months ago by rfran010 ★ 1.3k
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0
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451
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Comment: Comment: Demultiplexing Tool
4 months ago by rfran010 ★ 1.3k
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1
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1.4k
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Comment: Comment: RNA STAR and trimming
4 months ago by rfran010 ★ 1.3k
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1
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528
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Answer: Answer: IGV - ChIP-Seq
4 months ago by rfran010 ★ 1.3k
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1
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1.2k
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Comment: Comment: Running fastqc in parallel
4 months ago by rfran010 ★ 1.3k
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525
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Comment: Comment: File format to view overlapping peaks on multiple separate tracks in IGV
4 months ago by rfran010 ★ 1.3k
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0
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451
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Answer: Answer: Demultiplexing Tool
4 months ago by rfran010 ★ 1.3k
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0
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370
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Answer: Answer: Stranded cDNA libraries and genome mapping
4 months ago by rfran010 ★ 1.3k
2
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1
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464
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Answer: Answer: bamCoverage --MNase error : function a paired end library is required.
4 months ago by rfran010 ★ 1.3k
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0
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933
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
4 months ago by rfran010 ★ 1.3k
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1
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933
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
4 months ago by rfran010 ★ 1.3k
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0
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550
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Comment: Comment: bedtools -F minimum overlap, possible BUG ?
updated 4 months ago by 44k • written 4 months ago by ★ 1.3k
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0
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933
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
4 months ago by rfran010 ★ 1.3k
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1
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600
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Comment: Comment: Chip-Seq and DEGS
4 months ago by rfran010 ★ 1.3k
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2
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933
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Answer: Answer: Reporting of multimapping reads by STAR and Hisat2
4 months ago by rfran010 ★ 1.3k
1
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1
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877
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Comment: Comment: CutNtag normalization without spike in
4 months ago by rfran010 ★ 1.3k
1
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0
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652
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Comment: Comment: Understanding Differing results between STAR and kallisto
4 months ago by rfran010 ★ 1.3k
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0
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345
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Answer: Answer: Need Help with Normalizing Western Blot Data with Inter-Gel Variability
5 months ago by rfran010 ★ 1.3k
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1
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791
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Comment: Comment: Overlapping cut and tag H3k27 peaks and ATAC-Seq peaks
5 months ago by rfran010 ★ 1.3k
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1
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467
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Comment: Comment: Subset VCF to exon region but still get intron_variant annotation
5 months ago by rfran010 ★ 1.3k
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0
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751
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Comment: Comment: Creating GCT files
5 months ago by rfran010 ★ 1.3k
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1
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751
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Answer: Answer: Creating GCT files
5 months ago by rfran010 ★ 1.3k
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1
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965
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Comment: Comment: Help aligning Nanopore Long Read RNA seqs
5 months ago by rfran010 ★ 1.3k
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1
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739
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Answer: Answer: Removing batch effect in time-series data
5 months ago by rfran010 ★ 1.3k
1
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1
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552
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Comment: Comment: how linearize nucleotide lines in axt file
updated 5 months ago by 15k • written 5 months ago by ★ 1.3k
1
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1
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965
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Comment: Comment: Help aligning Nanopore Long Read RNA seqs
5 months ago by rfran010 ★ 1.3k
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1
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965
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Comment: Comment: Help aligning Nanopore Long Read RNA seqs
5 months ago by rfran010 ★ 1.3k
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1
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562
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Comment: Comment: gene expression design
5 months ago by rfran010 ★ 1.3k
1
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0
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658
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Comment: Comment: Making heatmaps of ATACseq annotation data in R?
5 months ago by rfran010 ★ 1.3k
0
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0
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520
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Comment: Comment: Detecting a virus in RNA-Seq Data
5 months ago by rfran010 ★ 1.3k
1
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1
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514
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Answer: Answer: deeptools Compute reference-point and scale-regions
5 months ago by rfran010 ★ 1.3k
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0
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609
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Answer: Answer: Clusters in Differential Gene Expression Data
5 months ago by rfran010 ★ 1.3k
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1
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617
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Comment: Comment: Removing batch effect and doing differential gene expression analysis
5 months ago by rfran010 ★ 1.3k
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0
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257
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Comment: Comment: Can I downsize ChIP-seq data for ChIP-ed samples
5 months ago by rfran010 ★ 1.3k
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0
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399
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Comment: Comment: Exon count and GC content
5 months ago by rfran010 ★ 1.3k
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0
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615
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Comment: Comment: How to know protomter position in the chromosome?
5 months ago by rfran010 ★ 1.3k
1
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1
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658
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Answer: Answer: Making heatmaps of ATACseq annotation data in R?
5 months ago by rfran010 ★ 1.3k
0
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1
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562
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Answer: Answer: gene expression design
5 months ago by rfran010 ★ 1.3k
1
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1
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1.2k
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Answer: Answer: Working with NCBI downloadable Datasets
12 months ago by rfran010 ★ 1.3k
3
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1
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931
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Answer: Answer: Writing a for loop with if statement to concatenate files with the same end of n
13 months ago by rfran010 ★ 1.3k
1
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1
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715
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Comment: Comment: bedtools intersect by position & stand not working even with common regions
14 months ago by rfran010 ★ 1.3k
1
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0
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1.7k
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Answer: Answer: Getting the overlap between two GTF files
14 months ago by rfran010 ★ 1.3k
2
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1
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1.1k
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Answer: Answer: How the first sequencing template removed in pair end sequencing
14 months ago by rfran010 ★ 1.3k
1
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1
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1.2k
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Comment: Comment: Hisat2 index and alignment question
14 months ago by rfran010 ★ 1.3k
244 results • Page 2 of 5
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